This file includes links to papers published by Eubios Ethics Institute, and some other organizations, in the first section. Next it includes topical extracts from EJAIB and EEIN between January 1994 - 2006 (older news items are in separate files). Last date of updating is referenced in the main News page. Latest news and papers is at the bottom of each of the two sections.
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Abbreviations for journals
Eubios Ethics Institute home page
on genome research in agriculture
Related Papers from Eubios Ethics Institute Publications
Macer, Darryl (1991) "Whose Genome Project?", Bioethics 5, 183-211.
Fujiki, N. & Macer, D.R.J., eds., Human Genome Research and Society (Christchurch, N.Z.: Eubios Ethics Institute 1992).
Fujiki, N. & Macer, D.R.J., eds., Intractable Neurological Disorders, Human Genome Research and Society (Christchurch, N.Z.: Eubios Ethics Institute 1994).
Book Review (1994): G.J. Annas & S. Elias, eds., Gene Mapping: Using Law and Ethics as Guides, in Politics & Life Sciences 13, 152-3.
Book Review (1994): G.J. Annas & S. Elias, eds., Gene Mapping: Using Law and Ethics as Guides, (different review) in Bioethics 8, 180-3.
GELS International Databank and Reporter on Genetics, Ethics, Law and Society EEIN 4 (1994), 74.
REVISED OUTLINE OF A (UNESCO) DECLARATION ON THE PROTECTION OF THE HUMAN GENOME EJAIB 5 (1995), 97.
Mauron, A.HGP : The Holy Genome Project? An answer to the questionnaire concerning the UNESCO declaration on protection of the human genome EJAIB 5 (1995), 117.
UNESCO Revised Declaration on the Human Genome and its Protection in Relation to Human Dignity and Human Rights EJAIB 5 (1995), 150-1.
UNESCO Revised Declaration on the Human Genome EJAIB 7 (1997), 33-4.
North American Regional HGDP Committee's proposed Model Ethical Protocol
Fundamental Principles of Research on the Human Genome (Japan)
EJAIB 13 (2003), 8-10 Ethical Challenges of Human Genome Diversity Research - Xu Zongliang
Macer, DRJ. (2003), Ethical considerations in the HapMap project: An insider's personal view ", Eubios Journal of Asian and International Bioethics 13: 125-7.
EJAIB 13 (2003), 127-130 Provisions For Review of Genetic Research in Japan - Takashi Tsuchiya
Eiko SUDA and Darryl MACER, Ethical Challenges of Conducting the Hap Map Genetics Project in Japan, pp. 31-45 in Editors: Song Sang-youg, Koo Young-Mo & Darryl R.J. Macer, Asian Bioethics in the 21st Century, Eubios Ethics Institute, 2003.
Macer, DRJ. (2003), Do the ethical duties of donor, and administrators, depend on whether the database is public or private?, 311-21 in Knoppers, B.M. ed., Populations and Genetics: Legal Socio-Ethical Perspectives (Kluwer Legal International 2003).
International HapMap Consortium, "The International HapMap project", (pdf file) Nature 426 (2003), 789-96.
International HapMap Consoritum, "The International HapMap project", (pdf file) Nature Reviews - Genetics 5 (2004), 467-475.
Baoqi Su and Darryl Macer (2004), Privacy versus public interest in developing human
genetic databases , Eubios Journal of Asian and International Bioethics 14: 82-5.
HUGO Ethics Committee Statement on Genetic Databases (December 2002)
UNESCO International Declaration on Human Genetic Data (16 October, 2003; pdf)
Reviewed by: Michael Barr, Bioethics thick and thin: A review of Genomics In Asia: A Clash of Bioethical Interests? edited by M. SleeboomEJAIB 15 (January 2005), 30-32.
K. K. Verma and Rashmi Verma, Humans, a species with parapatric populations (?)EJAIB 15 (March 2005), 40-42.
Xinqing Zhang, Ethical reflection on the Creation of Human
Genetic Database: Based on a National
Survey on Chinese Genetic Scientists, EJAIB 17 (Jan. 2007), 1-5.
The updated goals for the US Genome Project are described in Human Genome News (Nov), 1-3, 5. The pace of research increases, one of the big factors being the completion of the first cloned genetic map in YACs by the French Genethon team; D. Cohen et al., "A first generation physical map of the human genome", Nature 366 (1993), 698-701; and the sequencing of cDNA by single pass sequencing strategies, now being pushed ahead by TIGR (The Institute for genome Research), which claimed by Nov. 1993 to have 35% of the human genes sequenced. Within a year or so most of the human cDNA partial sequences will be published from TIGR in a book, and of course in databases. A map of the mouse genome is N.G. Copeland et al., "A genetic linkage map of the mouse: Current applications and future prospects", Science 262 (1993), 57-66. A draft genome map is now on line on Internet, Science 262 (1993), 1967.
By 1998 the targets now include the complete sequence of E. coli and S. cerevisiae, and hopefully Drosophila melanogaster and Caenorhabditis elegans (a nematode worm); an STS map of the human genome at 100kb resolution, and a total of 80Mb of human sequence data with a capacity to sequence 50Mb a year; F. Collins & D. Galas, "A new five-year plan for the U.S. Human Genome Project", Science 262 (1993), 43-6, 20-2. Lancet 342 (1993), 1044 (where the NIH and HUGO seem to be mixed up!).
On the ELSI issues the goals include rather less measurable targets:
1. Continue to identify and define issues and develop policy options to address them.
2. Develop and disseminate policy options regarding genetic testing services with potential widespread use.
3. Foster greater acceptance of human genetic variation.
4. Enhance and expand public and professional education that is sensitive to sociocultural and psychological issues.
Their information sharing policy is to have all data shared within 6 months of manufacture. Comments on the databases, the recent split between the NIH and DOE in the GenBank database, and where the data will go is Science 262 (1993), 504-5; also on the huge increase in data, p. 47-8, 502-3. A conference report from a meeting on Bioinformatics and the HGP is in GEN (15 Nov1993), 1, 3, 25; Human Genome News (Sept 1993), 1-4.
HUGO has undertaken a project to make a yearly book on ethics and genetics and legislative developments, organised by Alex Capron and Bartha Knoppers. Let us hope that all the different groups interested in bioethics and genetics will cooperate.
The human genome diversity project is beginning to look at the genetic markers of different population groups (a total of 400-500 in all). An editorial in Nature Genetics 5 (1993), 313-5, reports on a recent visit to Mongolia and the problems of doing genetics there. It would be a useful affect of diversity studies if local facilities and research in genetics could be stimulated, rather than just samples being taken away to Western laboratories to analyse. As reported in the last issue, China has began a human genome project saying that this will be its focus. Let us hope that the International HUGO and scientists help those in poorer countries. A paper on genetic and linguistic diversity in the Americas is PNAS 90 (1993), 10663-7. More comments on the Chinese genome project, and a new institute in Shanghai are in Nature 366 (1993), 103.
A paper bringing forth another model organism is S. Brenner et al., "Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome", Nature 366 (1993), 265-8, 204-5. The total 400Mb genome is suggested as the best model for the human genome analysis. It has the smallest genome of all known vertebrates.
A review of genetics research at the annual symposium of the Whitehead Institute for Biomedical Research in Cambridge, Mass., is in Nature Genetics 5 (1993), 205-6. Progress in genome research and cancer genetics are among other topics reported. A personal review of Fred Sanger, who received two Nobel prizes, in devising the methods for sequencing proteins and DNA is in Scientific American (Oct 1995), 16-7. On sequencing developments see Science 262 (1993), 89-92 (proteins), 530-1 (DNA).
In the USA there are continuing calls by some for an independent commission to oversee the ELSI program, HCR 23(6) (1993), 5. They say it is not able to criticise the genome project, and also question what all the money spent has produced. For a review of the outcomes from ELSI from the NIH ELSI director see, E.T. Juengst, "Human genome research and the public interest: Progress notes from an American science policy experiment", AJHG 54 (1994), 121-8. He reports from some of the 65 projects that have spent over US$10 million, and now with an annual budget from NIH and DOE of about US$7 million. The paper is in a sense defending the ELSI program, and it aims to have defined policy options and programs capable of addressing several broad needs to cope with the genetic knowledge, by 1995.
A paper in French on the ethics of solidarity and responsibility in charting the human genome is in IJB 4 (1993), 289-92. A paper on the possibilities for determinism from the results of the genome project also in French is in IJB 4 (1993), 347-53. Two reviews of the book G. Annas & S. Elias, Gene Mapping: Using Law and Ethics as Guides (Oxford University Press 1992) are in SSM 38 (1994), 199-200; and (by D. Macer) in Politics in the Life Sciences 13 (Feb 1994), 24-5.
In the last issue EEIN the physical map of the human genome was reported (Nature 366 (1993), 698-701). Further reports on this achievement are in GEN (1 Jan 1994), 1, 34-5. A draft genome map has appeared on Internet the computer network, for those who have the desire and need to see more; Science 262 (1993), 1967. A general review of how to compare genes is S.F. Altschul et al., "Issues in searching molecular sequence databases", Nature Genetics 6 (1994), 119-29. A review of the genome project is E.P. Hoffman, "The evolving genome project: Current and future impact", AJHG 54 (1994), 129-36. Of general interest is a product review, G. Zehetner & H. Lehrach, "The reference library system - sharing biological material and experimental data", Nature 367 (1994), 489-91. They have been sharing cosmids, YACs, P1 and cDNA libraries on filters to scientists, and the results are stored in Internet for open access.
A review of the sequencing of the so-called "junk DNA" is revealing some interesting functions; Science 263 (1994), 608-10. There may be an additional system for regulating gene expression in multicellular eucaryotes - involving RNAs. The US DOE has begun projects to sequence the genomes of bacteria that are useful for protein manufacture or environmental clean-up; Science 263 (1994), 311. The E. coli sequence is expected to be complete soon, the additional bacteria include Pseudomonas putida and Methanothermus. A discussion of robotic systems for DNA analysis is Biotechnology 12 (1994), 80-1. A report on genetics research in China is in an editorial in Nature Genetics 6 (1994), 111-2. A book review of interest is in AJHG 54 (1994), 159.
A commercial deal between Human Genome Sciences and researchers at John Hopkins University has been made, Nature 368 (1994), 86. A mixed UK consortium is also being established, Nature 368 (1994), 675. As discussed in the patent section, a French lab has stopped plans to license its 800 family DNA bank to a US company, Nature 368 (1994), 575.
Book reviews of G.J. Annas & S. Elias, eds., Gene Mapping: Using Law and Ethics as Guides, by D. Macer are in Bioethics 8 (1994), 180-3; Politics & Life Science 13 (Feb 1994),152-4. I generally call for the greater internationalisation of ELSI research, though this book is a good starting point for ELSI studies. A general book note on Human Genome Research and Society (Eubios EI) is in Bioethics 8 (1994), 102. Another book review is of B. Jordan, Travelling Around the Human Genome (INSERM, 1993), are in Science 263 (1994), 1299-300.
A paper reporting more of the nematode genome sequence is R. Wilson et al., "2.2Mb of contiguous nucleotide sequence from chromosome III for C. elegans", Nature 368 (1994), 32-8. This is easily the longest continuous sequence of DNA yet reported; Nature 368 (1994), 14-5. It also shows the superiority of the Sanger method of sequencing. The Japanese E. coli project has been unable to complete desired goals, and the international situation is described in Nature 368 (1994), 383. The US DOE has added another US$3 million for genome projects on microorganisms with potential applications in energy or environmental uses.
The automated construction of a 6cM human genetic linkage map is reported in Nature Genetics 6 (1994), 384-90; and another map is in pp. 391-3. On automated sequencing see Nature 368 (1994), 474-5; New Scientist (12 Feb 1994), 20. A map of chromosome 9 is in Genomics 19: 203-14. A genetic map of the cow genome is in W. Barendse et al., "A genetic linkage map of the bovine genome", Nature Genetics 6 (1994), 227-35; Nature 368 (1994), 167. They report the same degree of differences in gene order of conserved loci compared to humans as in human/mouse comparisons. A discussion of the future of the French gene mapping centre, which includes mapping multigene diseases, is in Science 263 (1994), 1552-4.
The computing aspects of genetic maps are discussed in Nature Genetics 6 (1994), 326-8. The use of fluorescent staining of chromosomes (comparative chromosome painting; ZOO-FISH) is reported in Nature Genetics 6 (1994), 342-7. A method for filling in gaps in genome maps is L.J. Ferrin & R.D. Cemerini-Otero, "Long range mapping of gaps and telomeres with RecA-assisted restriction endonuclease (RARE) cleavage", Nature Genetics 6 (1994), 379-83. The functions of the noncoding regions of the genome are discussed in Science 263 (1994), 608-10; Biotechnology 12 (1994), 215.
A technique for rapidly purifying CpG islands in the genome, which are rich in coding sequences, is in S.H. Cross et al., "Purification of CpG islands using a methylated DNA binding column", Nature Genetics 6 (1994), 236-44. By cutting up the DNA and pulling out these regions, the search for genes is easier. A review of gene sequencing machines is GEN (15 March 1994), 10-11. The use of PCR to read 35kb sequences is reported in Science 263 (1994), 1564-5. A book review on YACs is in Biotechnology 12 (1994), 405. Also on techniques see Genomics 19 (1993), 391-3, 417-24, 506-14; 20: 68-74; TIBTECH 12 (1994), 27-32.
An ancient mouse promoter gene has been revived, and worked OK, Science 264 (1994), 27; PNAS (15 Feb). It had been silent for an estimated 5 million years inside the genome. Comments on dinosaur revival are in New Scientist (29 Jan 1994), 38-41, (5 March), 54-5. A paper looking at the origins of Americans is in PNAS 91 (1994),, 833-5, 1158-62; Science 263 (1994), 753, 1088-9. On general human origin research, which supports a single human origin,Science 263 (1994), 611, 758, 1087-8, 1363; 264: 34-5; Nature 368 (1994), 55-6, 449-51, 452-4, 455-7; BioScience 44: 8-11. A book review of Atlas of the World's Languages, is in Nature 368 (1994), 361-2. A project to create a taxonomic map of all the world's organisms is Nature 368 (1994), 3.
Discussion of the activities of the ELSI committee of the USA is in Human Genome News (May), 5--7. They call for universal coverage, and it includes a statement on the use of DNA testing for presymptomatic identification of cancer risk. See also the letter in the front of this issue from Eric Juengst, who is soon to leave the NIH ELSI program. An editorial on the NIH genome center is Nature Genetics 7 (1994), 115-6.
A special issue of Nature Genetics 7 (1994), 217-339 (June) contains new maps, "New and improved genetic linkage maps for the human and mouse genomes". The average spacing of the mouse map (led by the MIT group) is 0.35cM, and that of the human map (from Genethon), 2.9cM. These are the current best maps in print, and are expected to be improved at yet further increasing rates. The Genethon map has about double the number of markers presented in their first map in October 1992. See also Nature Genetics 7 (1994), 1-4; Science 264 (1994), 1404. A 666,448 bp sequence is reported in B. Dujon et al., "Complete DNA sequence of yeast chromosome XI", Nature 369 (1994), 371-9, 101-2. They find some significant discrepancies with the genetic maps. A recent model is the zebrafish, J.H. Postlethwait et al., "A genetic linkage map for the Zebrafish", Science 264 (1994), 699-707, 904-5; Nature 369 (1994), 19-20. On another more familiar animal, I. Levin et al., "An autosomal genetic linkage map of the chicken", J. Heredity 85: 79-85. A general method for constructing radiation hybrid maps of whole genomes is Nature Genetics 7 (1994), 22-8; and a method for purification of human chromosomes using hybrid cell technology, Nature Genetics 7 (1994), 29-33. On biocomputing, Science 264 (1994), 854.
A discussion of the selfish DNA in junk-DNA is in New York Times (28 June 1994), C1,3. The paper referred to is B.F. Koop & L. Hood, "Striking similarity over almost 100 kilobases of human and mouse T-cell receptor DNA", Nature Genetics 7 (1994), 48-53; Nature 369 (1994), 164. The conservation of DNA sequence in introns suggests that there is some selective pressure and function for the so-called "junk".
Book reviews on the genome project are in New Scientist (7 May 1994),41-2. The wheat genome project is being discussed in Britain, with more funding being sought, New Scientist (26 March 1994), 10.
The Human Genome project in the UK is seeking more industry support, according to a new government report; The human genome mapping project in the UK: priorities and opportunities in genome research, HMSO 1994, 146pp., £9.95, ISBN 0-114300992; Lancet 343 (1994), 1028; BMJ 308 (1994), 1123. So is the USA in a new program, Science 264 (1994), 766. The UK MRC is deciding whether to fund a mouse genome center, Nature 369 (1994), 93. In Japan the STA received a 20% increase for their human genome analysis program.
A genetic analysis of the frozen Austrian corpse, 5100 years old, is O. Handt et al., "Molecular genetic analyses of the Tyrolean Ice Man", Science 264 (1994), 1775-8. DNA from ancient Easter Islanders is analysed in Nature 369 (1994), 25-6. A letter reporting tuberculosis in a bone dated from 600AD in Turkey is Lancet 343 (1994), 1360-1; BMJ 308 (1994), 1370. A review on the origin of humans is Scientific American (May 1995), 88-95; and on the application of molecular phylogenies, Science 264 (1994), 671-7. The mitochondrial eve study that supports an African origin is now supported by nuclear DNA studies, Science 264 (1994), 350-1.
A book review of R. Cook-Deegan, The Gene Wars. Science, Politics, and the Human Genome (New York: Norton, 1994, 416pp., US$25) is in Science 265 (1994), 685-6. A review of W. Cookson, The Gene Hunters: Adventures in the Human Genome Jungle, (Aurum, 1994, 208pp., £17) is Nature 370 (1994), 518. A critique of criticism of diversity studies, and ethical issues to be considered is M. Lock, "Interrogating the human diversity genome project", SSM 39 (1994), 603-6. A general comment is Biotechnology 12 (1994), 840.
The use of human artificial episomal chromosomes for cloning large fragments is reported in Nature Genetics 8 (1994), 33-41; and the use of the human adenovirus genome as a YAC, PNAS 91 (1994),, 6186-90. On YACs, etc, TIBTECH 12 (1994), 280-6. Automated analysis is discussed in Biotechnology 12 (1994), 581-4.
Genethon has announced it is now focusing on searching for the control sequences for gene expression; New Scientist (9 July 1994), 6; Science 265 (1994), 182. As discussed above, a French government report recommends a 3 year limit on protection of genetic data in CEPH studies before it is generally open to researchers, Science 265 (1994), 315. Roche and SmithKline Beecham are investing up to US$200 million in total into different genome project studies; Biotechnology 12 (1994), 559-60. The ICI science group Zeneca is also investing, Nature 370 (1994), 406.
A map of chromosome 11 is M.R. James et al., "A radiation hybrid map of 506 STS markers spanning human chromosome 11", Nature Genetics 8 (1994), 70-6. This is the region enclosing the locus for hereditary breast and ovarian cancer genes.
Ancient bacteria that are frozen in time are discussed in New Scientist (16 July 1994), 16. Mammoth DNA sequences are claimed to be representative in Nature 370 (1994), 333-4. DNA evolution and repeat sequences are discussed in PNAS 91 (1994),, 6815-8; NEJM 331 (1994), 191-3. An editorial on mtDNA studies of Native Americans is AJHG 55 (1995), 7-11; see also Nature 370 (1994), 338.
Call for comments on the human genome diversity project, on behalf of the UNESCO Bioethics Committee subcommittee on population genetics. Please send any comments regarding any aspect of the study, including ethical and legal aspects, to the editor, D. Macer, on behalf of the subcommittee.
A special issue of UNESCO Courier (Sept), 5-27, includes several papers on the ethical aspects of genetics, including gene therapy, prenatal diagnosis, commercial aspects and human dignity. A description of the DOE ELSI projects, in the fifth year of funding, is Human Genome News (Sept), 10. A book review of 5 books on the project is Nature 371 (1994), 753-4; and also, NEJM 331 (1994), 885-6; JAMA 272 (1994), 1076-7; Lancet 344 (1994), 393. Also on the ethical aspects, Knoppers, B.M. & Chadwick, R. "The human genome project: Under an international ethical microscope", Science 265 (1994), 2035-6; McLean, S.A.M. "Mapping the human genome - friend or foe?", SSM 39 (1994), 1221-7. The Bilbao Declaration is in IDHL 45: 234-7.
The company Human Genome Sciences, which includes TIGR, Gaithersburg, has released terms of the way researchers can access the 150,000 cDNA sequences it has compiled into a database, which include 35,000 of unknown function, Nature 371 (1994), 463; Science 266 (1994), 25. Users must sign an option agreement, and companies will have 6 months to try to make joint shares in commercial developments. A report from a meeting discussing the development of a combined human gene map between academic and commercial researchers is Nature 371 (1994), 363-6; Science 265 (1994), 1991. The release of the cDNA sequences from TIGR to the general community is under the condition that they can take first look for 30 days before publication at papers, with an option for a 30 day extra delay. The well known scientist Thomas Caskey is leaving Baylor College to become senior vice president for basic research at Merck, with one of the key projects the establishment of a human genome map available for all researchers without charge; Nature 371 (1994), 731. Merck is building on the chance to make a good image with the scientists, but TIGR argues that they want some reimbursement for the US$200 million investment. However, it is likely that they already have selected some genes for development. A review of collaborative genome companies, V. Glaser, "Genome firms lure pharmaceutical giants into lucrative collaborations",GEN (15 Sept 1994), 8-9.
The access to the world-wide DNA database in the public library, which includes over 50,000 cDNA sequences is discussed in Science 265 (1994), 1993-4; and in general information on the network, Science 266 (1994), 20-2. A discussion of the efforts to manage the genome sequence data is Human Genome News (Sept), 1-7; NEJM 331 (1994), 599-601. The four major nucleotide databases now contain about 200 million bp of data,with input from 8,000 species. The data is shared, and updated almost daily. The amount of data is expected to reach 10 billion bp in a decade.
The latest genome map, with an average density of 0.7 centiMorgan spacing is Cooperative Human Linkage Center, et al., "A comprehensive human linkage map with centiMorgan density", Science 265 (1994), 2049-70; with comment, pp. 2031-2. The latest yeast chromosome sequence is Johnston, M. et al., "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII", Science 265 (1994), 2077-82, which includes up to 269 genes (open reading frames of over 300 bp). A review from agriculture is Beattie, C.W. "Livestock genome maps", TIG 10 (1994), 334-7.
Book reviews on ancient DNA are in The Sciences (Nov/Dec), 45-6. Gene trees are discussed in PNAS 91 (1994),, 8900-4; Nature 371 (1994), 215-20. methods to look for genes include: TIG 10 (1994), 352-7; AJHG 55 (1995), 379-90; Nature 371 (1994), 631-2; and on large scale genome comparison in 2-d gels, Genomics 23: 15-22.
Call for comments on the human genome diversity project, on behalf of the UNESCO Bioethics Committee subcommittee on population genetics. Please send any comments regarding any aspect of the study, including ethical and legal aspects, to the editor, D. Macer, on behalf of the subcommittee. A review of the current scientific aims of the diversity project is Science 266 (1994), 720-2. A paper on DNA variety in the Pacific is Lancet 344 (1994), 1070-2.
Further discussion (see EEIN 4: 82) of the access to genome databases is in New Scientist (15 Oct 1994), 10, (26 Nov 1994), 14-5; Science 266 (1994), 208-9, 538; Nature 372 (1995), 10. Views against the genome database are in GenEthics News 3 (1994), 4.
A discussion of the Italian Telephon project which has been funding genetics research, in the same way as the well publicised French Telephon which was behind the gene mapping factory of genethon, is in Nature Genetics 8 (1994), 309. A Telephon Institute of Genetics and medicine has been founded in Milan. There are some accusations of misconduct in another French charity, L'Association pour la recherce sur le Cancer (ARC); Nature 372 (1995), 493.
A common mapping language is called for following a recent genome project meeting, Science 265 (1994), 2031-2;GEN (1 Nov 1994), 3. A review of the results of the US genome centers (those centres funded by the NIH/DOE) in Human Genome News (Nov), 1-14. Tunisia is to establish a genome institute under French help, Science 266 (1994), 359. The speed of the project is applauded in JAMA 272 (1994), 1394.
The possibilities and fears of determinism are discussed in New Scientist (15 Oct 1994), Supplement 8-11; see also CMAJ 151 (1994), 73.
A short bibliography of Fred Sanger, the inventor of protein and DNA sequencing is in New Scientist (8 Oct 1994),32-5. The use of expressed sequence tag (EST) data to discover genes is reported and described in Nature Genetics 8 (1994), 321-2. The method of linkage equilibrium studies between disease-causing and marker alleles has been applied to find a gene for recurrent intrahepatic cholestasis, Nature Genetics 8 (1994), 380-6. A discussion of genome linkage scanning is Nature Genetics 8 (1994), 211-2; and a review is Cheteverin, A.B. & Kramer, F.R. "Oligonucleotide arrays: New concepts and possibilities", Biotechnology 12 (1994), 1093-9. Computation of DNA is a large challenge, Science 266 (1994), 993-4. General papers on chromosomes and DNA structure, including the hints of language in junk DNA, are Science 266 (1994), 387-8, 1320.
Claims of DNA from dinosaurs are reported and discussed in Woodward, S.R. et al. "DNA sequence from Cretaceous Period bone fragments", Science 266 (1994), 1229-32, 1159; and on an embryo and eggs, Science 266 (1994), 731, 779-82. Prehistoric samples can be identified by blood samples or samples of other tissues, Science 266 (1994), 298-9. Human history is discussed in Nature 372 (1995), 228-9, 373 (1995), 15.
The 88pp. 1994 (Sept. 1st) Supplement to the ELSI Bibliography complied by Yesley, M.S. and Ossorio, P.N. from the US Dept. of Energy has been sent by M. Yesley to all of the recipients of EJAIB. We should thank his efforts for compiling the list of so many ELSI-related works, and for sharing it. For those readers who did not receive a copy and would value these bibliographies, please contact M. Yesley, a member of both the IAB Genetics and Ethics network and one of our editorial board members; Michael S. Yesley, J.D., MS A187, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.
A review of the company, Human Genome Sciences, TIGR, is Science 266 (1994), 1800-2. They have announced the next step will be public release of a gene map for 60,000 human genes in 2-3 years time; Science 267 (1995), 443. Praise for Merck's efforts to make a free sequence database is in Science 266 (1994), 1790-1; and they released 15,000 expressed sequences in February, Nature 373 (1995), 549. Canada is building a big genome centre in Toronto; Nature 373 (1995), 274.
Researchers at Genome Therapeutics Corp. (Waltham, MA) have announced the sequencing of the genome of a bacteria that causes peptic ulcers, Helicobacter pylori, GEN (1 Jan 1995), 36. The genome sequencing project on E. coli and other bacteria is updated in Science 267 (1995), 172-4. A genetic linkage map of the rat is in Nature Genetics 9 (1995), 3-4, 63-9. The Mammalian Comparative Database of genetic maps is reviewed in Nature 373 (1995), 363-5.
General papers on methods for locating unknown disease genes in population studies are in AJHG 56 (1995), 11-4, 18-32, 33-43. Human DNA polymorphism is reviewed in NEJM 332 (1995), 318-20. Also on technical issues of HGP, AJMG 55 (1995), 115; PNAS 91 (1994), 12832-6, 12837-41, 12842-6. A review of DNA sequencing software is GEN (15 Jan 1995), 8.
Book reviews of Cavalli-Sforza, L.L. The History and Geography of Human Genes are in NEJM 332 (1995), 349-50; Scientific American (Jan 1995), 102-3. On human population genetics and history, Science 267 (1995), 35-6; Nature 373 (1995), 472-3; PNAS 91 (1994), 12288-92. Extraction of primate DNA from dung is described in Nature 373 (1995), 393.
A proposal to finish sequencing the human genome using existing technology for US$300-400 million by the year 2001 has been made by two scientists who have been sequencing the C. elegans genome, Science 267 (1995), 783-4. This is well under current budgets, and ahead of schedule. There is obvious controversy as many researchers would lose potential research grants if the focus was shifted - the same as any shift of priorities. We need to ask what is the principal goal, the sequence of humans, or other organisms and technology.... The NIH has announced it will shift some resources into high speed sequencing, Science 267 (1995), 607.
A report from the 1993 Bilbao International Workshop on the Human Genome Project is IJB 5 (1994), 317-9. The discussion of where the European gene storage reference should be is Nature 374 (1995), 296. Letters supporting the NIH funding to complete the high quality DNA sequencing of E. coli are in Science 267 (1995), 601.
On patterns in junk DNA, Scientific American (March 1995), 24. In general on DNA sequencing, NEJM 332 (1995), 589-91; TIBTECH 13 (1995), 10-1. Baboon DNA genetics is discussed in Science 267 (1995), 615-6. On the potential to make brain maps, New Scientist (7 Jan, 1995), 30-4. A review of research that is possible on surplus leukemia cells from patients is JME 20 (1994), 225-8.
A letter on population genetics and the human diversity project in Columbia is Science 267 (1995), 774. A paper on human origins is Horai, S. et al. "Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs", PNAS 92 (1995), 532-6. They suggest a divergence time of 4.9 million years ago for humans and chimpanzees, and an African origin of Homo sapiens sapiens. Such studies of human ancestry also use linguistics, and methods to gauge language similarity, Science 267 (1995), 843-8.
The ethical issues of the HGP are discussed in JAMA 273 (1995), 1304-6; NEJM 332 (1995), 826-7; AJHG 56 (1995), 1008-9; JME 21 (1995), 69-71. The MRC has reached agreement over access to the Human Genome Sciences database with SmithKline Beecham, Nature 375 (1995), 4. In Japan Takeda Chemicals has an agreement with SKB over the gene database use.
The decision by the NIH and MRC to allow grants to start complete human genome sequencing using techniques developed for the C. elegans genome should allow a complete sequence by the year 2001 or earlier!, Nature 375 (1995), 93-4. A sequence comparison of the human and pufferfish genes for Huntington's disease that found all 67 exons were conserved despite a shorter 23kb version of the 170kb human gene, and calls for greater use of the pufferfish as a model genome, Nature Genetics 10 (1995), 67-75. There is dispute over the NIH decision to halt funding to the lab doing the E.coli full length sequence; Science 268 (1995), 1899-900. Chicken genome mapping is reviewed in TIG 11 (1995), 190-4; and a sheep genome map is in Genetics 140 (1995), 703-24.
Germany will start a HGP, funding at DM50 million a year for 8 years; EBN 201 (1995), 2; Nature 375 (1995), 175, 259-60, 525. France is reviewing its strategy, Nature Medicine 1 (1995), 293. On methodology: Genomics 27 (1995), 90-100; and on computing, Nature 375 (1995), 262; and computing using DNA, Science 268 (1995), 481-3, 498-9.
Comments on the Human Genome Diversity Project (HGDP) from indigenous peoples who complain the lack of information are in Third World Network Features, 25 April, 1995; The Ram's Horn 126 (May 1995), 7. Also on the subject, Science 267 (1995), 1530-2, 1907-8; 268 (1995), 364-5. UNESCO International Bioethics Committee has a subcommittee looking at ethical issues of population genetics, and in previous issues I called for comments. A draft report is available for comment, and will be presented to the UNESCO Bioethics Committee at the September meeting. It is likely that UNESCO, WHO, CIOMS, HUGO, ICSU, and possibly other bodies will be involved in a global regulatory committee, with some representatives of people's groups. In North America the HGDP committee has included two representatives of indigenous peoples groups, and this should happen in a global sense, though we must ask who are suitable representatives.
A revived bacteria from 25 million years ago was discussed above, see also Newsweek (29 May 1995), 48. The Austrian ice man had tattoos, Science 268 (1995), 33. Brain banks are reported in Science 267 (1995), 1426, 1764.
Comments calling for expansion of the ELSI program of HUGO, with support from a US DOE genome program leader are in Lancet 346 (1995), 300. A reprinted review of the ethical debates on the human genome is Knoppers, B.M. & Chadwick, R. "The Human genome Project: under an international ethical microscope", Int. Digest of Health Legislation 46 (1995), 2637. A description of US education efforts (also there is a www site), includes Education Key to Understanding, Acceptance, NCHGR Outreach and Education, NCHGR ELSI Program, DOE Human Genome Program Outreach and Education; Human Genome News 7(1)(May-June 1995), 1-4.
A new book is an English version of Revista de Rerecho y Genoma Humano, NO. 1 July-Dec 1994, Casabona, R., ed., Law and the Human Genome Review, BBV Foundation, Provincial Government of Biscay 1994, 261pp, ISSN 1134-7708. It includes a number of European contributions on ethics, law and genetics.
The first complete bacterial DNA sequence has been published, Fleischmann, R.D. et al. "Whole-genome random sequencing and assembly of
The complete genetic sequence allows study of gene function at a new level. A paper on modeling genetic networks is Science 269 (1995), 649, 650-6. A review of zebrafish genetics is Science 269 (1995), 480. The complete yeast genome sequence should be completed by the end of 1995, and a review is in Science 268 (1995), 1560-1; and a break down of the size of the chromosomes that remain to be sequenced (the biggest) is Nature Genetics 10 (1995), 253-4. An analysis of chromosome IV from yeast which included 129 predicted genes of which 28% were known, is Nature Genetics 10 (1995), 261-8.
Nature is soon to publish a Genome Directory, containing the latest catalogue of expressed sequence tags (ests) from Human Genome Sciences, despite threats from over genome researchers, Nature 376 (1995), 459-60. The editor has given a 2 page explanation of the reason. The data includes 55,000 ests that correspond to authentic genes, of which only 10,000 are in existing databases! A list of world wide web sites for EST maps is Nature Genetics 10 (1995), 369-71. See the basic reference site is http://www.ncbi.nlm.nih.gov/dbest/index.html
A review of the decision to switch to large scale human gene sequencing is Science 268 (1995), 1270-1. A comparison of the funding of the HGP in different countries has been made and found US leading, though the EU is at a similar level as the USA, report available from European Biotechnology Information Service Newsletter 5 (No. 1, 1995, 4).
More on the recently announced German genome project is in Science 268 (1995), 1556-8. European genetic information banks are discussed in Science 269 (1995), 630.
A discussion of the expansion and communication problems from automation of molecular biology is in Biotechnology 13 (1995), 741-5. A letter discussing genome size and responsiveness to carbon dioxide among plants is Nature 376 (1995), 559-60.
The publication Genome Digest 2(4) (October 1995), is now representing HUGO world-wide not just HUGO Europe. There are HUGO members in 40 countries. There will be a workshop on ELSI issues at the HGM'96 meeting in Heidelberg, 22-24 March 1996. One of the final reports of the OTA is Federal Technology Transfer and the Human Genome Project. Background Paper, OTA-BP-EHR-162 (Washington USGPO, Sept. 1995). It includes results of a survey of technology transfer.
The final version of the report of Subcommittee on Bioethics and Population Genetics, of the UNESCO International Bioethics Committee, "Bioethics and human population genetics research" was finished in the midst of completing this issue of EJAIB. This report has not been endorsed by UNESCO, and represents the views of the subcommittee members: Heng Leng CHEE, Laila EL-HAMAMSI, John FLEMING, Norio FUJIKI, Genoveva KEYEUX, Bartha KNOPPERS, and Darryl MACER. Our draft of September, was discussed in Nature 376 (1995), 372-3. We are responding to that editorial and news report, which included several points we debate. An electronic copy of the final report can be viewed at the Eubios Ethics Institute site:
http://eubios.info/PG.html
An introduction to the issues of population genetics is Keyeux, G. "Population genetics and the study of human gene polymorphism", CERPH Newsletter 5 (Sept/Oct 1995), 2-4. A conference report on the New Zealand HRCC conference Whose Genes are they anyway? is EuroScreen 4 (1995), 4-5; Otago Bioethics Report 4 (Oct 1995), 6-7. Anthropology and race is discussed in Nature 377 (1995), 570; and in a book review of Marks, J. Human Biodiversity: Genes, Race, and History (Aldine de Gruyter 1995, 321pp., US$47) in Nature 377 (1995), 589-90. A report from a HUGO Genome Diversity Program meeting in South America, held in Belo Horizonte, Brazil, is in Genome Digest 2(4) (1995), 7-8.
A book review of Cavalli-Sforza, L.L. & F., The Great Human Diasporas: The History of Diversity and Evolution (Addison-Wesley, 1995, 300pp., US$27.50) is Nature 377 (1995), 493-4. A letter reporting a probable single founding Y-chromosome for American Indians is Nature Genetics 11 (1995), 15-6. Papers on the science of human population genetics include: Jorde, L.B. et al. "Origins and affinities of modern humans: A comparison of mitochondrial and nuclear genetic data", AJHG 57 (1995), 523-38; which disputes an African origin for modern humans; AJHG 57 (1995), 201-23; Nature 377 (1995), 112; Science 269 (1995), 754-5, 918, 923-4; PNAS 92 (1995), 7585-9, 8092-9. A letter reporting a buried infant from a Neanderthal site is Nature 377 (1995), 585-6.
A statement of principles called Genetic Medicine and Genome Research has been translated from the French version "Enonce de principes: Medecine genetique et recherche genomique", Researche en sante 8 (June 1995), 30-4. It is available from by B.K. Knoppers, see the bioethics and genetic network. A report from the Turku conference on ethics and genetics is Lancet 346 (1995), 497. The World Medical Association has agreed to draw out guidelines on the use of genetics, Nature 377 (1995), 279. It joins the UNESCO effort (see the revised Genome Declaration in this issue), and HUGO ELSI Working Group which met in mid-October (D.M. is a member of both).
A review of the Genome Directory (Nature 377, 6547S Supplement, 28 Sept 1995) is in Nature 377 (1995), 285-7. It includes Adams, M.D. et al. "Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence", pp.3-174; Chumakow, I.M. et al. "A YAC contig map of the human genome", pp. 175-298; and second generation YAC contig maps of chromosome 3, 12, 16, 22. On the controversy to publish the directory and threats from academics, Lancet 346 (1995), 893; BMJ 311 (1995), 893-4. A review of research on analysis of gene function is Science 270 (1995), 368-71. The second full bacterial genome sequence, also a product of TIGR is reported in Fraser, C.M. et al. "The minimal gene complement of Mycoplasma genitalium", Science 270 (1995), 397-400; 445-6. The small parasite has 482 genes.
Britain's Wellcome Trust has committed funds to a project to complete sequencing of the human genome by 2002; Nature 378 (1995), 120. The money will go to the Sanger Centre in Cambridge, to sequence one-sixth of the human genome. The project to sequence all, at an accuracy more than 99.9% covering 95% of the genome, is expected to be shared one third in Cambridge, one third in the USA at Washington University, St. Louis, and one third by other collaborators. A paper reviewing the call for progress to full DNA sequencing of the human genome is Gibbs, R.A. "Pressing ahead with human genome sequencing", Nature Genetics 11 (1995), 121-5; also Science 270 (1995), 394-6. Japan has announced plans for two state-funded companies, on through MITI and the other through MHW, together with companies, Nature 378 (1995), 2. However, there is less money for large scale sequencing then in other countries, Science 269 (1995), 1504-6.
A review of gene searching strategies for computer databanks is NEJM 333 (1995), 645-7. A review of capillary electrophoresis and fluorescence detection for DNA sequencing is GEN (15 Sept 1995), 16-7; and other products in Nature 377 (1995), 659-61. A review of cheaper methods for sequencing and their role in promoting the commercialisation of genome projects is GEN (1 Sept 1995),6-7, 15, 48. Some machines are already capable of 7-9000 bases an hour at 5-10 cents a base. On mathematics with DNA, SA (Sept 1995), 20, 22.
Papers reporting methods for screening of genes for development from the C. elegans genome project: Nature Genetics 11 (1995), 309-13, 314-20. A survey suggesting smaller genomes in better flying birds is Nature 377 (1995), 391. A study of static reduction of genes is SA (Sept 1995), 40, 42. A review of polyploidy in plants is PNAS 92 (1995), 8089-91; and a physical map of Aradopsis thaliana chromosome 4 is Science 270 (1995), 480+. Rapid genome change is found in synthetic polyploids of Brassica, PNAS 92 (1995), 7719-23.
A symposium on Genetics and the Human Genome Project: Where Scientific and Public Cultures Meet, was held in Stanford University, 3-4 Nov 1995. For details contact Prof. Joan Fujimura, Dept. of Anthropology, Stanford University, Stanford, Calif. 94305-2145, USA. General comments on the HGP are in Biotechnology and Development Monitor 25 (Dec 1995), 8-11.
In Japan a consortia has been developed between government and industry to fund more genome-based industry, Science 270 (1995), 1432-3.
A protein linkage map of E.coli bacteriophage T7 is in Nature Genetics 12 (1995),72-7. A review of genome sequencing in model organisms by companies is Science 270 (1995), 1904; TIG 11 (1995), 429-31; Nature 378 (1995), 236; Nature Medicine 1 (1995), 866-8; NS (28 Oct 1995), 18; and there is an STS-based map of the human genome in the same issue (22 Dec 1995). The 8 Dec 1995 issue of Science includes a series of papers on chromosome research; and on the history of YACs, NS (11 Nov 1995), 34-7. A review of the Bacillus subtilis genome project collaboration is TIBTECH 13 (1995), 210-6. Computing technology for genome research is reviewed in GEN (Dec 1995), 7. A review of current genomic databases is GEN (15 Oct 1995), 30-1. Optical mapping is discussed in Nature 378 (1995), 516-7.
Ancient DNA studies are reviewed in AJHG 57 (1995), 1259-62; and a study with 12,000 year old b-globin is in AJHG 57 (1995), 1267-74. A letter by several members of the UNESCO International Bioethics Committee Population Genetics and Bioethics subcommittee (D.Macer, J. Fleming, G. Keyeux, B.M.Knoppers) is in Nature 379 (1996), 11. Also on population genetics, AJHG 57 (1995), 1252-4. The Indian caste system and genetics is discussed in AJHG 57 (1995), 1243-6.
Papers suggesting a common male ancestor lived 188,000 years ago, consistent with the mitochondrial eve hypothesis, are in Nature 378 (1995), 376-80; see also, pp. 239-40. A review of studies of the Y chromosome and human evolution is TIG 11 (1995), 449-56. A paper against the mitochondrial eve hypothesis is in Science 270 (1995), 1930-1936; and on the mitochondrial D-loop in chromosome 11, which is used in studies, Nature 378 (1995), 485-9, 489-92. A paper on immunological methods to trace primates is Naturwissenschaften 82 (1995), 517-20.
A special issue of JLME 23 (4, 1995), 309-59 is titled "The Genome Imperative" and is from a Symposium of the same name, including papers on genetic privacy and discrimination, with further comments on the Genetic privacy Act on pp. 360-81. The volume is to be recommended. A favourable book review of Fujiki, N & Macer, DRJ, Intractable Neurological Disorders, Human Genome Research and Society (Eubios Ethics Institute, 1994) is in Bioethics 10 (1996), 87.
A summary of the Human Genome Project in different countries is Human Genome News 7 (Sept-Dec. 1995), 1-9. The countries with genome programs include: Brazil, Canada, China, Denmark, EU, France, Germany, Israel, Italy, Japan, Mexico, Netherlands, Russia, Sweden, UK, USA. In France the leading researcher, Daniel Cohen has left the CEPH to the company Genset, to make an effective competitor to the US company Human Genome Sciences, Nature 379 (1996), 478.
Indian researchers are asking for stricter rules on gene-hunting (see also patent section), Nature 379 (1996), 381-2. The HGDP already has guidelines, but many other researchers do not. A letter on biological anthropology and the HGDP is in Nature 379 (1996), 293. Research on microsatellite markers in human beings and evolutionary studies to other animals are in Nature Genetics 11 (1995), 360-2. A review of a book that is easy to read for nonspecialists is, Cavalli-Sforza LL & F., The Great Human Diasporas: The History of Diversity and Evolution (Reading, MA, Addison-Wesley, 1995, 300pp, US$27.50) is in NEJM 334 (1996), 409. Some background on American Indian fears of conquest is Sterba JP, "Understanding evil: American slavery, the Holocaust, and the Conquest of the American Indians", Ethics 106 (196), 424-448.
The largest genome sequence yet to be completed (2.8 million nucleotides) has been reported finished by Human Genome Sciences, that of Staphyloccoccus aureus, Lancet 347 (1996), 251. It contained 1400 genes similar to those known, and 1000 extra genes. A report on the Whitehead Research Institute Genome map, available on Internet
This was a large meeting of 1000 researchers including over 500 posters and about 150 oral presentations. Each of the three days set 3 hours lunchtime aside for poster sessions, to encourage discussion among researchers with the consequence that there were usually three overlapping workshops held simultaneously at other times.
Two of the IBC members, Bartha Knoppers and Darryl Macer were invited to speak at a workshop on the first day "Ethical, social, legal and political implications of the Human Genome Project", which was chaired by Ira Carmen, and supported by the Canadian Genome Analysis and Technology Program . This was a 3 hour session devoted to bioethical issues and was well attended. The first three talks before afternoon tea saw more than 400 in attendance, and included: Eric Juengst (USA), "Bringing it back to the laboratory: New issues for basic genome scientists", who looked at confidentiality, pedigrees, privacy from research and third party interests; BK, "Towards an international framework for human genome research", who reviewed the HUGO Code of Ethics which was accepted by the HUGO Council the day before (Nature 380 (1996), 279) ; and DM, "Informed consent and group participation in population genetics research and the Human Genome Diversity Project", who reviewed the bioethics issues of population genetics research, the different world-views between researchers and some indigenous population groups, and the work of the UNESCO IBC subcommittee on population genetics report (Nature 379 (1996), 11). The issue of group consent seems to be divisive among researchers, and it will be difficult to effect.
After the break the numbers diminished, but there were another 3 excellent talks with Therese Marteau, "What is an acceptable level of psychological harm from genome applications", who focused on surveys of attitudes to genetic counseling in London, and how the word "genetics" may have a worse image than the word "test" itself; Debra Chase et al. "Ethical and social issues involved in the collection of a blood sample from a complete birth cohort", who considered the extent of informed consent in obtaining samples from persons around Sellafield nuclear reprocessing plant and the preservation of privacy; Sandy Thomas et al., "Human genome patents: An analysis of ownership", who presented a breakdown on the over 1100 human gene patents already awarded (Nature 380 (1996), 387-8), in which Japan rates first among all the countries.
The second day opened with a plenary lecture by Joseph Straus, "Intellectual property and genome research". He concluded that there was no need for additions to the HUGO statement on patenting, that there be no special law on patenting of the results of genome research, and there was a need to look at the breadth of patents, and the exclusion criteria, and to avoid speculative patents on sequences of unknown function or utility. The work of Thomas et al., and consideration of the patent question was useful for the IBC work in the coming year on intellectual property.
The rest of the meeting was basically biological science and informatics. There was a workshop on population genetics which included some discussion of consent issues, and overall a few researchers mentioned issues of some relation to bioethics. The first lecture of the meeting was by Jean Weissenbach "Integrating maps of the human genome" (Dib, C. et al. "A comprehensive genetic map of the human genome based on 5,264 microsatellites", Nature 380 (1996), 152-154 (A supplementary issue of Nature contains the data!). On the third day, Eric Lander "Mapping in Mouse and Man", reported that international cooperative project to finalize a genetic map of the mouse has been completed, with an average spacing of 0.2cM (450kb) (Dietrich, WF. et al. "A comprehensive genetic map of the mouse genome", Nature 380 (1996), 149-52), and that the human genetic mapping efforts would be completed within a few months, now having 30,000 STS markers across the genome.
Overall, the project is proceeding very rapidly and it will be interesting if the Universal Declaration on the Human Genome and Human Rights is accepted by the UN system before they receive the full sequence of the human genome. It was reassuring that so many attended the ethics session, and it was in the meeting at all, however, it will be more reassuring when ethical issues are also discussed, or at least mentioned, in the scientific context in which they arise during the presentation of research methods and results.
One of the further announcements from the HUGO Annual Meeting discussed in the report by D. Macer above, was the completion of the full sequence of the first eucaryotic genome, yeast, at 12 million bases, Science 271 (1996), 1798-9; 272 (1996), 27, 481. However the public release of the last 20% of this sequence was further delayed until end of April, raising controversy among many researchers. The NIH has incorporated rapid sequence release agreements with grant applications for large scale projects, Nature 380 (1996), 279, 471; Science 272 (1996), 188. Also on data-sharing Science 272 (1996), 477-8. The genome maps are announced in the HUGO Meeting Report above, see also Nature 380 (1996), 111-2. In Japan, the entire genome of blue-green algae, cyanobacterium, which is 3.5 megabases has been finished by the Kazusa DNA Research Institute in Chiba, Japan, Nature 379 (1996), 761. Further expansion of genome sequencing in Japan is underway, Nature 380 (1996), 375.
Human Genome Sciences has announced a deal to sequence the corn genome, together with Pioneer Hi-Bred, and also that it will soon complete the sequence of Methanococcus jannaschii, Nature Biotechnology 14 (1996), 255-6. International collaboration on microbial and plant genome sequencing is described in GEN (15 Feb 1996), 1, 14. The full sequence of Mycobacterium tuberculosis will be sequenced by a collaboration between the Wellcome Trust supported Sanger Centre, and the Institute Pasteur, Lancet 347 (1996), 890. On international genome agreements, Biotechnology 13 (1995), 1149-50.
A general review of the project is in SA (March 1996), 100-5. A resource centre for information on the human genome is available on the Internet
There is growing evidence from Alu repeat sequences for an African origin for modern Homo sapiens, Tishkoff, SA. et al. "Global patterns of linkage disequilibrium at the CD4 locus and modern human origins", Science 271 (1996), 1380-7, 1364. A new book from Ciba Foundation, published by John Wiley & Sons has been announced, Weiss, KM. ed., Variation in the Human Genome (ISBN 0471-96152-3, 1996). A discussion of the HGDP is in GenEthics News 10 (Jan/Feb 1996), 6-8; and a letter on the term the "most beautiful people" and the word Caucasian in Cavalli-Sforza's recent book is Nature Genetics 12 (1996), 361-2. Book reviews on Neanderthal's are in Nature 380 (1996), 119. A review of study of genes of organisms trapped in amber, for millions of years, is SA (April 1996), 84-91.
The US NIH/DOE ELSI working group is under external review, Nature 381 (1996), 357. Also on ethics and the HGP, IDHL 47 (1996), 118-9. Third World participation in genome projects is called for in TIBTECH 14 (1996), 74-7. Papers on the ethical issues of population genetics are in Nature 381 (1996), 11-4.
Please note that the home page of Human Genome News (now supported only by DOE) and the Information service is at
A commentary of the prospects for use of the knowledge of the HGP is GEN (15 May 1996), 4, 25; and on the commercialization of the genome project, Nature Genetics 13 (1996), 1-5. The yeast genome included 6500 genes, and many are being explored and it should be the first eucaryotic to have all its genes known, Lancet 347 (1996), 1175; Nature 381 (1996), 660-1; Nature Biotechnology 14 (1996), 429, 571; NS (27 April 1996), 26-9. A computer model suggesting that the original bacteria could have survived on 128 genes, rather than the 250 gene set minimal based on the bacteria sequenced so far, is described in Science 272 (1996), 1098-9. A review of the different species genomes that are being studied is Nature Genetics 13 (1996), 14-5. Zebrafish as a model species is discussed in Science 272 (1996), 1103; and pufferfish in PNAS 93 (1996), 1363-5, 1366-9. General comments on genetic sequencing (the 600+kilobase T Cell receptor gene region has been sequenced) and the genome project is Science 272 (1996), 1736-7. On bioinformatics, Science 272 (1996), 1730-1; Nature 381 (1996), 653-4.
A new strategy for genomic sequencing is suggested in Nature 381 (1996), 364-6. Genetic mapping strategy is discussed in Nature Genetics 13 (1996), 134-7. A possible function for some of the noncoding DNA in the genome is suggested in NS (8 June 1996), 19; also, BioEssays 18 (1996), 421-5.
A further study supporting a recent African origin for modern humans from minisatellite diversity is Nature Genetics 13 (1996), 154-60. Also on origins, Nature 381 (1996), 658-9; AJHG 58 (1996), 1109-10; Science 272 (1996), 1356-64; PNAS 93 (1996), 196-200, 2603-7, 4360-4; and of animal DNA studies, Nature 381 (1996), 484; Science 272 (1996), 1102. Studies on cattle DNA have suggested that since at least 22,000 years ago Africans and Europeans have separately been domesticating cattle, Science 272 (1996), 1105. Studies suggest DNA can only survive for millions of years unchanged in amber, NS (18 May 1996), 21; Science 272 (1996), 810, 864-8. A 500 year old Inca girl who was a human sacrifice has been on display in Washington, after removal from the glacier, Time (3 June 1996), 51.
Highlights from 5 US ELSI projects are summarized in Human Genome News (April-June 1996), 2-3. These include a project on crime and punishment, a radio program, adult science literacy, and school education program. The HUGO Ethics Statement which appeared in the May issue of EJAIB, and in HUGO Genome Digest 3 (No. 2, May 1996), 2-3; and is on-line, is also on-line at the HUGO site,
SmithKline Beecham and Human Genome Sciences have agreed to license their database to three further companies for US$140 and license deals. The companies are Schering-Plough (Madison, NJ), Synthelabo (France), and Merck KgaA (Germany), GEN (August 1996), 1, 11. Other companies such as Takeda (Japan) already had signed agreements. Two companies in the USA have formed a new genomics company ChemGenics, GEN (1 June 1996), 1, 26. On bioinformatics, Science 273 (1996), 265. On commerce and the HGP, TIBTECH 14 (1996), 143-4. A review of the German genome project is in Science 273 (1996), 570-1; and the Canadian genome project is facing cuts in funding, Science 273 (1996), 867. We should applaud their progress so far in the high proportion of grants spent on ELSI issues.
On the discoveries of the yeast genome, now on the Internet
The US NRC is holding public forums on the Human Genome Diversity Project (HGDP) which may well determine whether it receives US funding in coming years. A series of papers on genetics and anthropology, genes, people and property is in Cultural Survival Quarterly (Summer 1996), 22-70. Harvard University is helping China in efforts to map human genes there, Science 273 (1996), 315. In the Sinai which has polygamy it has been found that there is low diversity of the Y-chromosome, AJHG 59 (1996), 741-3. The results of mitochondrial DNA sequences comparisons among 241 individuals from ethnic groups in Africa are in AJHG 59 (1996), 437-44. Cultural barriers to the open use of archaeological remains are discussed in NS (22 June 1996), 30-3; (3 Aug. 1996), 8; Nature 382 (1996), 659.
Methods to extract ancient DNA are described in use on 600 year old remains, AJHG 59 (1996), 368-76; and on microsatellites, PNAS 93 (1996), 6470-5. Study of cichid fish in Lake Victoria find that it only took 12500 for 300 species to evolve, NS (15 August 1996), 15.
A general review is Macer, D., "The genome
project - a commentary", pp. 345-76 in Bittar, E., ed, Principles
of Medical Biology, Vol. 5, Molecular and Cellular Genetics
(JAI Press, 1996, ISBN 1-55938-809-9). A call for improved ethical
standards in collection of DNA is Science 273 (1996), 1788-9.
A call for genomic sequence information to be released
immediately and freely in the public domain is Science
274 (1996), 533-4. On the overhand too much data could flood
the banks, Science 274 (1996), 534-5. On the use of genome
databases, Nature Biotechnology 14 (1996), 678-9, 711-4,
828; Nature Genetics 14 (1996), 1-2.
A special issue is Science 274 (26 October
1996), 479, 488-90, ++, 536, 610-4. on the genome. In Schuler,
GD. et al. "A Gene Map of the Human Genome", Science
274 (1996), 540-6, more than 16,000 human genes have been
mapped relative to a framework map that contains about 1000 polymorphic
genetic markers. The gene map unifies the existing genetic and
physical maps with the nucleotide and protein sequence databases
in a fashion that should speed the discovery of genes underlying
inherited human disease. The integrated resource is available
through a site on the World Wide Web at <http://www.ncbi.nlm.nih.gov/SCIENCE96/>.
A paper on the completion of the sequence of the
genome of the yeast Saccharomyces cerevisiae is
Science 274 (1996), 546-67. The sequence of 12,068 kilobases
defines 5885 potential protein-encoding genes, approximately 140
genes specifying ribosomal RNA, 40 genes for small nuclear RNA
molecules, and 275 transfer RNA genes. The genome shows a considerable
amount of apparent genetic redundancy, and one of the major problems
to be tackled during the next stage of the yeast genome project
is to elucidate the biological functions of all of these genes.
A review on mice is Meisler, MH. "The role of the
laboratory mouse in the human genome project", AJHG
59 (1996), 746-71; and on a linkage map of cattle, J. Heredity
87 (1996), 261-71.
The U.S. government put up $12.7 million to begin
large-scale sequencing of Arabidopsis thaliana,
a small, flowering member of the mustard family, Science
274 (1996), 30; Nature Biotechnology 14 (1996), 696. The
awards will fund the US portion of an international collaboration
that will attempt to sequence the genome by 2004. Sequencing Arabidopsis
should have a significant impact on plant science, because all
250,000 species of flowering plants, are genetically very similar.
Although ten times more expensive at the moment, a new method
for DNA sequencing may become preferable in the future, Kuster,
H. et al. "A strategy for rapid and efficient DNA sequencing
by mass spectrometry", Nature Biotechnology
14 (1996), 1123-8.
A report of the completion of the third complete
bacterial genome, that of Methanococcus jannaschii (1,760
genes) is in GEN (1 Sept. 1996), 4; Nature Biotechnology
14 (1996), 1199, 1211-2, 1236. As mentioned previously it was
done by the HGS company, with some support from US DOE. Analysis
of the smaller genome of Mycoplasma genitalium is in Nature
Genetics 14 (1996), 14-5.
A report of protests of indigenous groups against
the Human Genome Diversity Project made to the US National
Research Council review board is Nature 383 (1996), 208.
A review on study of human history is von Haeseler, A et al.
"The genetical archaeology of the human genome", Nature
Genetics 14 (1996), 135-40. On mitochondrial DNA evolution,
Nature Genetics 14 (1996), 146-51; AJHG 59 (1996),
927-34, 935-45; in South American mummies, Annals Human
Genetics 60 (1996), 293-303.
Members of the International Bar Association have
announced a draft International Convention on the Human Genome,
NS (2 Nov 1996), 3, 8. The members of the Association
have claimed that they were working with the support of HUGO,
however HUGO has strongly denied this, and distances themselves
from the draft Declaration (the HUGO Ethics Committee discussed
this at our meeting in November 1996). Parts of the Declaration
bear strong similarity to the UNESCO Declaration on the Protection
of the Human Genome, released in 1994, and revised since then
(see earlier issues of EJAIB for copies, and the on-line
copies on Eubios homepage. The UNESCO Declaration 4th version
is being released in January 1997, and will be printed in EJAIB
when available. Given that the drafters of this Convention have
not been asked by HUGO, contrary to their claim, and the similarities
to UNESCO's Draft, DM decided not to print the draft Convention
in EJAIB. Their hopes that it will be adopted by the UN
seem to ignore the fact that with the support and cooperation
of UN agencies, and unanimous support of the 186 member countries
of UNESCO, UNESCO has been working on an International Declaration
since 1993. Those readers who want details should contact the
chair of the drafting committee, Martine Rothblatt, Mahon &
Patusky Law Offices, 1735 Connecticut Ave, NW, Third Floor, Washington
DC 20009, USA. Let us hope that the most suitable protection
for the human genome is found. The extent of methods to protect
consent requirements for DNA samples and the recent NIH policy
are debated in Science 273 (1996), 902-3.
American Indians' claims of a 9300-year-old
skeleton as their ancestor have led federal officials to stop
scientific research on some of the oldest human remains discovered
in North America. Anthropologists at the University of California,
Davis, have been told to halt DNA analysis while lawyers determine
who has rights to the remains, Science 274 (15 Nov 1996).
A tissue bank of Egyptian pharaohs extracted from the
mummies is being analyzed to examine genes and infectious diseases,
NS (23 Nov 1996), 12. On diversity of the Y chromosome,
Ann Hum. Genetics 60 (1996), 401-8. New discoveries in
Australia from stone tools suggest that aborigines may
have settled the continent up to 176, 000 years ago, and rock
art from 75,000 years ago has been found, NS (7 Dec 1996),
28-31. In Israel Yeminite immigrants who died in the 1950s are
being opened to take DNA samples to check on parental lines and
adoption, as mistakes may have led to marriages between family,
Lancet 348 (1996), 1161.
In a report providing general background on the
HGDP in Geneletter 1 (#3, 1996) it is said that
"The Human Genome Organization (HUGO), the UNESCO International
Bioethics Committee, and the House of Commons Science and Technology
Committee (United Kingdom) (1995, pp. xxviii-xx) have endorsed
the HGDP, provided that "real" informed consent can
be obtained." Actually the UNESCO IBC did not endorse the
project, but it did not reject it either. They also say "At
present, several projects - not related to HGDP - are proceeding
without opposition. The European Union has funded a project on
the Biological History of European Peoples, with the cooperation
of Walter Bodmer (Imperial Cancer Research Fund, London). The
Biotechnology Department in India is beginning a project to collect
samples from small tribal groups of under 1,000 people, groups
that are likely to disappear. China also has an ongoing project
similar to HGDP." - Actually the projects are related to
the HGDP, and the Indian group has had some complaints because
of US patent claims on Indian crops. The HGDP itself has not
begun, however, projects related to it are underway, as are numerous
unrelated population genetics projects.
The Indian government has approved a 5 year
US$20 million project to study the genetic variations of some
of its diverse population groups, Nature 384 (1996), 394.
The project will be run by the Department of Biotechnology,
as India has 465 communities including 75 endangered tribal groups.
The 35-page ethical protocol of the North American HGDP Committee
is on-line at <http://www-leland.stanford.edu/group/morrinst/hgdp.html>,
and the UNESCO IBC report is on-line at <http://eubios.info/PG.html>,
and we continue interest in the ethics of population genetics
(contact person D. Macer). For some opposition opinion see the
Rural Advancement Foundation International (RAFI), <http://www.charm.net/~rafi/rafihome.html>,
or Native Net <http://www.indians.org/welker/genome.html>,
or Cultural Survival <http://www.cs.org> Papers on the
HGDP include Law and the Human Genome Review 4 (Jan-June
1996), 13-5, 107-24, 141-64, 209-14; GeneWatch 10 (Oct
1996), 8-9.
A discussion of the Wellcome Trust's Genome Campus
in Hinxton near Cambridge, is in Science 274 (1996), 1293.
The US DOE is consolidating its US$35 million a year sequencing
effort under a single institute, the Joint Genome Institute, which
says it will sequence 40% of the 3 billion base pairs, Nature
383 (1996), 748. A report from a Canadian conference on research
funding including genome research is Lancet 348 (1996),
1026. A report on the French genome project is Genome Digest
(Oct 1996), 5-6.
A review is Caetano-Anolles, G. "Scanning of
nucleic acids by in vitro amplification: New developments and
applications, Nature Biotechnology 14 (1996), 1668-74,
1700-4. It reviews "fingerprinting" techniques including
the scanning of nucleic acids by amplification with arbitrary
oligonucleotide primers which can generate simple-to-complex patterns
from anonymous DNA or RNA templates without requiring prior knowledge
of nucleic acid sequence or cloned or characterized probes. Discrete
loci are amplified within genomic DNA, DNA complementary to mRNA
populations (cDNA), cloned DNA fragments, and even PCR products.
On genome sequencing methods, Nature Biotechnology 14 (1996),
1649-50.
A review of nucleic acid databases on the Web
is Nature Biotechnology 14 (1996), 1728. On the promise
of genomic sciences for medicine, Nature Biotechnology
14 (1996), 1516-8. A review of the differences in genome size
between different organisms, and how these may change is Nature
384 (1996), 315-6. A discussion of discoveries from the sequence
of the Archeae, Methanococcus jannaschii is TIG
12 (1996), 377-9; Science 273 (1996), 901-3. Avian genetics
and a method for sexing birds is reported in Nature 383 (1996),
761-2. Retroelements in genome organization are discussed in
Science 273 (1996), 737-8.
The first Latin American Meeting on Bioethics and the Human Genome
Project took place on October 9-12, 1996, in Manzanillo, Mexico,
as a UNESCO-supported satellite meeting of the 21st National Congress
of the Mexican Association of Human Genetics. Those present at
the Bioethics meeting drafted a document called "The Declaration
of Manzanillo," which supports the application of ethical
guidelines to the Human Genome Project. The Declaration supports,
in principle, UNESCO's "Declaration on the Human Genome and
Human Rights," but includes more provisions applicable in
clinical settings. One provision states that "Genetic testing
and the actions resulting from testing have as their objective
the well-being and health of the individual or the determination
of fetal genetic characteristics for the purpose of facilitating
autonomous reproductive decisions of the couples. On the other
hand, tests should not be used for imposition of population policies
or public health policies, or to satisfy the needs of third parties,
such as state agencies, employers, or insurers." GeneLetter
(January 1997). An Ibero-American Network on Bioethics and Genetics
has been established for the purpose of exchange of information
and collaborative research on social, ethical, and legal issues
related to the human genome. For further information, contact:
Dr. Jose Maria Cantu, Division of Genetics, IMSS, P.O. Box 1-3838,
Guadalajara, Mexico (Email: jmcantu@koch.mb.udg.mx)
A conference report on whether US minorities should be
concerned about the genome project is Human Genome News
8 (Oct-Dec 1996), 9-10. Lawyers, physicians seek genomics rules
NatBio 15 (1997), 10. The ethical oversight of the HGP
is discussed in Science 275 (1997), 22; Nature 385
(1997), 756. On applications of genetics to public health, AJPH
86 (1996), 1717-22.
The E.coli genome has been completely sequenced, Nature
385 (1997), 472. On mammalian comparative maps, NatGen
15 (1997), 6-7, 47-57; and the mitochondrial genome of Arabidopsis
thaliana contains 57 genes in 366,924 nucleotides, NatGen
15 (1997), 57-61. A zebrafish genome project is being debated,
Science 275 (1997), 923. A series of papers on the genome
project are in Science 275 (1997), 601-2, 767-72; and on
business Science 275 (1997), 773-5. Organelle genomes have
been sequenced, Science 275 (1997), 790. On telomere function,
Nature 385 (1997), 676-7. On the yeast genome database,
Nature 385 (1997), 29-30.
On bioinformatics, NatBio 15 (1997), 3; Science
275 (1997), 301-2, 327-34. The information on the CEPH reference
families is in Annals Hum. Genet 60 (1996), 447-86.
A review of the Human Genome Project in Korea is in HUGO
Digest (Jan 1997), 5-6; and in Australia, Science
275 (1997), 25-6. On human genome agreements, Science
275 (1997), 601-2. Genetic studies in Pima Indians are
in NatMed 3 (1997), 238-40; AJHG 60 (1997), 166-73,
188-96 . On disputes on buried bones, NS (4 Jan, 1997),
41. On Y-chromosome variation in great apes, Nature 385
(1997), 125-6; and evolution, Nature 385 (1997), 111-2.
A call to bring more ethical issues into anatomy and return of ancestral remains is Jones, DG. & Harris, RJ. "Contending for the dead", Nature 386 (1997), 15-6. A report on the protest of indigenous groups at the September 1996 DNA Sampling conference in Montreal is in GeneWatch 10 (4-5) (Feb 1997), 5, 18-9. Related to the issue of colonization is Nature 386 (1997), 339-40. On modern human origins, Kay, RF. et al. "Anthropoid origins", Science 275 (1997), 797-804; Nature 386 (1997), 337; NS (29 March 1997), 18; AJHG 60 (1997), 755-7, 772-89. The use of DNA markers to determine ethnic affiliation is reviewed in AJHG 60 (1997), 957-64. The technical issues of using ancient DNA are discussed in Nature 386 (1997), 764-5; AJHG 60 (1997), 1001-2.
Harrington, JJ. et al. "Formation of de novo centromeres and construction of first-generation human artificial microchromosomes", Nature Genetics 15 (1997), 345-55, 333-4. They combined long synthetic arrays of alpha satellite DNA with telomeric DNA and genomic DNA to generate artificial chromosomes in human HT1080 cells. They are mitotically and cytogenetically stable in the absence of selection for up to six months in culture, bind centromere proteins specific for active centromeres, and are estimated to be 6-10 megabases in size, approximately one-fifth to one- tenth the size of endogenous human chromosomes. A human gene mutation database is reviewed in TIG 13 (1997), 121-2.
A list of complete genomes mapped on the Japan KEGG Pathways
A factory for sequencing DNA at 20 million base pairs a year is going to be built in the San Francisco area by the US Dept. Energy, Science 275 (1997), 1573. In general on the expanding range of sequencing techniques, GEN (1 April 1997), 1, 13, 35. A project to systematically identifying novel expressed sequence tag (EST) sequences that are highly related to genes in model organisms and map them to positions on the mouse and human maps is described in Bassett, DE. et al. "Genome cross-referencing and XREFdb: Implications for the identification and analysis of genes mutated in human disease", Nature Genetics 15 (1997), 339-44. A public database, XREFdb (http://www.ncbi.nlm.nih.gov/XREFdb/), is open.
A call to bring more ethical issues into anatomy and return of ancestral remains is Jones, DG. & Harris, RJ. "Contending for the dead", Nature 386 (1997), 15-6. A report on the protest of indigenous groups at the September 1996 DNA Sampling conference in Montreal is in GeneWatch 10 (4-5) (Feb 1997), 5, 18-9. Related to the issue of colonization is Nature 386 (1997), 339-40. On modern human origins, Kay, RF. et al. "Anthropoid origins", Science 275 (1997), 797-804; Nature 386 (1997), 337; NS (29 March 1997), 18; AJHG 60 (1997), 755-7, 772-89. The use of DNA markers to determine ethnic affiliation is reviewed in AJHG 60 (1997), 957-64. The technical issues of using ancient DNA are discussed in Nature 386 (1997), 764-5; AJHG 60 (1997), 1001-2.
Harrington, JJ. et al. "Formation of de novo centromeres and construction of first-generation human artificial microchromosomes", Nature Genetics 15 (1997), 345-55, 333-4. They combined long synthetic arrays of alpha satellite DNA with telomeric DNA and genomic DNA to generate artificial chromosomes in human HT1080 cells. They are mitotically and cytogenetically stable in the absence of selection for up to six months in culture, bind centromere proteins specific for active centromeres, and are estimated to be 6-10 megabases in size, approximately one-fifth to one- tenth the size of endogenous human chromosomes. A human gene mutation database is reviewed in TIG 13 (1997), 121-2.
A list of complete genomes mapped on the Japan KEGG Pathways
A factory for sequencing DNA at 20 million base pairs a year is going to be built in the San Francisco area by the US Dept. Energy, Science 275 (1997), 1573. In general on the expanding range of sequencing techniques, GEN (1 April 1997), 1, 13, 35. A project to systematically identifying novel expressed sequence tag (EST) sequences that are highly related to genes in model organisms and map them to positions on the mouse and human maps is described in Bassett, DE. et al. "Genome cross-referencing and XREFdb: Implications for the identification and analysis of genes mutated in human disease", Nature Genetics 15 (1997), 339-44. A public database, XREFdb (http://www.ncbi.nlm.nih.gov/XREFdb/), is open. Comments on the roles of HUGO and
HUGO Code of Conduct are in Politics & Life Sciences
16 (1997), 127-9. Sequencers and HUGO are calling for faster
data release (see also Patent section), Science 276
(1997), 1189-90. TIGR has opened access to sequence from 11 microorganisms,
including those which cause tuberculosis, cholera and malaria,
Nature 388 (1997), 11. Germany has been also told
to accelerate release, Nature 387 (1997), 111; and a clause
in the Genome Project grants that would have given industrial
collaborators 3 months exclusive access to sequence data has been
dropped due to public opposition, Science 276 (1997), 1323.
A map with spacing of 75,000 base
pairs of the human X chromosome has been released, Genome Research
(March 1997), Science 276 (1997), 41. The yeast
genome directory has been published by Nature 387 (1997),
459-62, as a supplement. On bioinformatics, Science 276
(1997), 1724-5, 1862-3. More on human artificial chromosomes is
NatGen 15 (1997), 333-5, 345-55; Science 276 (1997),
38-9. The future of genomic medicine is discussed in Lancet
349 (1997), 1228. Funding for malaria genome sequencing is discussed
in Nature 387 (1997), 647.
On genome research in Europe a conference
review is GEN (15 June 1997), 1, 12, 41. A consortium
of Millennium Pharmaceuticals, Bristol-Myers Squibb and Affymetrix
are forming a US$8 million project for 5 years genome research
at the Whitehead Institute/MIT Center for Genome Research, EBN
245 (1997), 6; Science 276 (1997), 891.
Sequencing of a 536kb plasmid of Rhizobium
has found that it contains a different range of genes than that
found in the genomes of bacteria, Freiburg, C. et al. "Molecular
basis of symbiosis between Rhizobium and legumes",
Nature 387 (1997), 394-401, 352-4. The plasmids contain
more adaptive genes, and in this case are linked to nodule formation
and nitrogen fixation.
Human history is discussed in light
of a new 800,000 year old Spanish fossil which may have bee an
originator of both modern humans and Neanderthals, Science
276 (1997), 355-6, 754-5, 1331-3; NS (7 June), 16; Supplement
1-4; SA (June 1997), 74-9; July 1997), 21-2. On phylogenetics,
Science 276 (1997), 227-32. A second bacteria which keeps
its DNA enclosed in a pirellulosome membrane has been identified,
NS (17 May), 19. An ancient mitochondrian DNA has been
found that resembles a eubacterial genome has also been found,
Nature 387 (1997), 484-5, 493-7. Ancestral DNA age is
discussed in Nature 388 (1997), 143.
A new journal is Ayaangwaamizin:
The International Journal of Indigenous Philosophy. The
purpose of Ayaangwaamizin is to provide a forum for dialogue
on Indigenous thought. The title chosen for the Journal, Ayaangwaamizin,
is drawn from the Anishnabe language. Translated literally, it
is usually read as "to go carefully," "to tread
carefully." Some of the papers in vol. 1(1) (Spring 1997),
include: Cordova VF. "EcoIndian: A Response to J. Baird Callicott",
pp. 31-44; Driben P. et al. "No Killing Ground: Aboriginal
Law Governing the Killing of Wildlife Among the Cree and Ojibwa
of Northern Ontario, pp. 91-107. The International Journal of
Indigenous Philosophy will be published semi-annually. Subscription
rates for one volume (two issues) are: Individuals: $33 in Canadian
funds, Institutions: $53 in Canadian funds; Add $13 in Canadian
funds for overseas subscriptions. Payable by Master Card, Visa,
American Express, Money Order, to Lakehead University Bookstore,
955 Oliver Road,Thunder Bay, Ontario, P7B 5E1 CANADA (E-Mail:
bookstr@lakeheadu.ca).
TIGR and HGS have separated, GEN 17(July 1997),
39; NS (5 July 1997), 15; Science 276 (1997), 1959.
Human Genome Sciences (HGS) reportedly threatened to get a court
injunction to prevent The Institute for Genome Research (TIGR)
from going to press with the sequence of the H. influenzae
genome, an illustration of the growing disputes which lead to
a split. HGS pockets the $38 million it still owed TIGR over the
next five and one half years, retains its rights to patent any
data TIGR has generated to date, and secures a noncompete agreement
on the 10 therapeutic proteins it is presently developing. Other
organizations that were funding non-HGS research at TIGR may have
also wanted intellectual property rights for the expressed sequence
tags (ESTs)-short sequences that uniquely identify full-length
genes- they had funded. Venter says that he is not interested
in the patenting of strategic ESTs. However, the US Patent and
Trademark Office (PTO) said since January 1997, the PTO has been
asking inventors who hold the 350 patent applications containing
approximately 500,000 ESTs to select 10 ESTs in each of their
applications for PTO review. The PTO will then review these 10
ESTs based on the approximate $1,000 filing fee they initially
paid, NatBio 15 (1997), 693.
If the full-length sequence of a gene is determined and its function
is established, and a patent granted to the inventor, a company
that wants to develop that gene into a license will have to either
cross-license or to pay a royalty to all holders of patents for
ESTs whose sequences are contained in that gene. See the debate
on EST patents in the Patents section above. The National
Academy of Sciences has also stated it is opposed, Science
277 (1997), 41. The NIH received a 6% increase in the budget for
1998, and a 12% increase for the HGP, Nature 388 (1997),
316. The DOE is to open another sequence laboratory in San Francisco
area, Nature 388 (1997), 507.
The analysis of an extinct DNA suggests that Neandertals were
not contributors of mitochondrial DNA to modern Homo sapiens,
Krings, M. et al. "Neandertal DNA sequences and the
origin of modern humans", Cell 90 (1997), 19-30, 1-3;
Science 277 (1997), 176-8; Nature 388 (1997), 225-6.
A review on the methods to ensure no contamination of ancient
DNA is NatBio 15 (1997), 855-8. A law court has given scientists
a chance to examine a 9300 old human specimen taken by the Army,
Science 277 (1997), 173. On human origins and society,
PNAS 94 (1997), 3100-3; Science 276 (1997), 1816-7:
Lancet 350 (1997), 75. A 140 million year old dinosaur
embryo has been found in Portugal, Science 277 (1997),
41. Proteins have been extracted from T.rex bones, NS
(21 June 1997), 16; (26 July), 3.
The complete DNA sequence of Bacillus subtilis has been
finished, 4.2 million bases, Science 277 (1997), 478; Nature
388 (1997), 318 <http://www.pasteur.fr/Bio/SubtiList.html>.
It has 4000 genes. Another sequence is Tomb, JF. et al. "The
complete genome sequence of the gastric pathogen Helicobacter
pylori", Nature 388 (1997), 539-47. There are
now 10 microorganisms that have been sequenced. On Archaeal genomics,
Cell 89 (1997), 991-4. The chloroplast genome from Chlorella
vulgaris is in PNAS 94 (1997), 5967-72. On parallel
genomics, Science 276 (1997), 1887-8, 277 (1997), 393-4.
The US is including corn, rice and wheat in plant genome
project, Science 276 (1997), 1960-2, 277 (1997), 169; Nature
388 (1997), 312.
On German genomics, NatBio 15 (1997), 707; industry
has agreed to waive any exclusive access period, Nature
388 (1997), 409. There have been reports that industry-linked
groups, and geneticists have hoarded genome data, NatBio
15 (1997), 504. Canada is seeking ways to continue its genome
project, Science 277 (1997), 303. A series of papers on
genetics and the origin of species are in PNAS 94 (July
1997), 7691-7803. On molecular analysis, PNAS 94 (1997),
5506-7. There is progress in efforts to make an artificial human
chromosome, Science 277 (1997), 197.
A report on the HUGO Ethics Committee meeting of
1996 is in HUGO Pacific Genome Newsletter 3 (1, Feb. 1997),
6-7. A description of the ELSI program of the US HGP is KIEJ
7 (1997), 291-8. A positive review of a Eubios book, Protection
of the human genome and scientific responsibility is in Nursing
Ethics 4 (1997), 436-7. A less positive one is in JME
23 (1997), 331-2. On the genome project and patents, Sivaramjani
TR. & Brahmachari, SK, "Human genome studies and intellectual
property rights: Whither national interest?", Current
Science 72 (1997), 708-16.
A general book review on the progress in medicine
from genetics, NEJM 337 (1997), 718. The benefits of the
full sequence of Helicobacter pylori are summed up in BMJ
315 (1997), 383; and of E. coli sequence, Nature
389 (1997), 120-1; Blattner, FR. et al. "The complete genome
sequence of Escherichia coli K-12", Science
277 (1997), 1453-74; 1432-4. A project to find the minimum number
of genes needed for a cell to live is underway, NS (16
Aug. 1997), 30-3. A review of bioinformatics is Nature
389 (1997), 417-22. France is setting up a genomics centre for
study of complex diseases, Nature 389 (1997), 10. Drug
companies are supporting moves to link genetic databases and unify
them, Science 277 (1997), 902. Methods to make genetic
maps are reviewed in NatMed 3 (1997), 1046-8. On genomic
stability and DNA repair, Nature 389 (1997), 829-30; and
the potential of differentiated cells, Science 277 (1997),
1056. A review of centromeric DNAs is Human Genetics 100
(1997), 291-304. On progress in genomics, Nature Biotechnology
15 (1997), 923.
On human genetic evolution, Nature 388 (1997),
638; and linguistic studies, Nature 389 (1997), 544-6.
A review of a meeting on model organisms is Science 277
(1997), 1604. Letters on Neanderthal genetics are in Science
277 (1997), 1021-4; and on their possible use of music, SA
(Sept. 1997), 28-9. On the corn genome, Science
277 (1997), 884-6.
The same National Research Council (USA) report on the HGDP
has met with various reviews, depending on whether one is a supporter
or critic, and both emphasizing the aspects that are consistent
with their viewpoint. This is similar to the receipt of the UNESCO
IBC report (see Eubios website). Critical views of the HGDP include
GenEthics News (Oct/Nov 1997), 1-2; Lancet 350 (1997),
1306; and positive views in Science 278 (1997), 568; Nature
390 (1997), 221. The NRC called for oversight by an intergovernmental
organization, which is what had been suggested by UNESCO IBC,
but has been delayed in the absence of funding. A review of DNA
variation and the future of human genetics is NatBio 16
(1998), 33-9. Y-chromosome analysis shows that Adam was African,
Science 278 (1997), 675-80, 804-5. An editorial on DNA
variation and language affinities is AJHG 61 (1997), 1011-4.
On population genetics, NatGen 17 (1997), 371-3; and a
project to look for environmental health variation, Science
278 (1997), 569-70. Comments on Neanderthal DNA are in Science
278 (1997), 2041; Nature 390 (1997), 917-8; and on human
evolution, Nature 390 (1997), 120-1; Science 278
(1997), 2134-6. On dinosaur collecting and rights, SA (Dec
1997), 18; NS (18 Oct 1997), 42-3; Science 277 (1997),
1767.
Further genomes have been sequenced, including Bacillus
subtilis, Nature 390 (1997), 249-56; Archaeoglobus
fulgidus, Nature 390 (1997), 364-70; Borrelia burgdorferi,
Nature 390 (1997), 580-6, 553-4; and reviews are Science
278 (1997), 555, 631-8, 2042; Nature 390 (1997), 114-5,
237-8, 343; NatMed 3 (1997), 1076-8; PNAS 94 (1997),
12751-3. On the progress to make better genetic maps, Science
278 (1997), 2046-8. Plant genome research will be supported by
Monsanto's agreement with Millenium, Nature 390 (1997),
5; and by US NSF projects, Nature 390 (1997), 539. On animal
genomes, SA (Nov 1997), 24; Science 278 (1997),
203-5.
A DNA array technology enables an organism's entire complement
of genes, to be assessed at one time, and it has been done for
yeast, Saccharomyces cerevisiae, Wodicka , L. et al. "Genome-wide
expression monitoring in Saccharomyces cerevisiae", NatBio
15 (1997), 1359-67; 1343; 1317. This direct and highly parallel
approach involves the hybridization of total mRNA populations
to a set of four arrays that contain a total of more than 260,000
specifically chosen oligonucleotides synthesized in situ using
light-directed combinatorial chemistry. The measurements are quantitative,
sensitive, specific, and reproducible. Expression levels ranging
from less than 0.1 copies to several hundred copies per cell have
been measured for cells grown in rich and minimal media. Nearly
90% of all yeast mRNAs are observed to be present under both conditions,
with approximately 50% present at levels between 0.1 and 1 copy
per cell. On measuring DNA variation in humans, Science
278 (1997), 601-2, 605-7, 1580-1.
A review of Japanese genome projects is Science
278 (1997), 1700-2; and Canada is opening a large genome
sequencing centre, Science 278 (1997), 375. A conference
review from TIGR on the speed and cost of genomic sequencing and
genomic analysis on computers is GEN 17 (15 Oct 1997),
1, 6, 40. On postgenomic drug discovery, which could be called
classical biotechnology, NatBio 15 (1997), 1219-20, 1222,
1253; JAMA 278 (1997), 1282-3. On genome size reduction,
Plant Cell 9 (1997), 1900-1.
On bioinformatics, NatBio 15 (1997), 1253-6. Genome Database
(GDB), which provides human gene mapping data to human
genetics researchers from its base at Johns Hopkins School of
Medicine, will cease operations by July 31, 1998. GDB's
principal funder, the DOE Office of Energy Research, is discontinuing
support to focus its informatics resources on the sequencing phase
of the Human Genome Project. The servers for continued access
to the current copy of GDB will be maintained in Oak Ridge National
Laboratory's Computational Bioscience Section (http://compbio.ornl.gov).
This will be a static version of the database, and no further
development is currently contemplated. (Full GDB termination statement:
http://www.gdb.org/shutdown/notice.html).
An interview with Francis Collins, the head of the US genome
project, over his Christian faith is SA (Feb. 1998), 28-9.
A discussion of functional genomics and drug discovery is GEN
18 (1 Feb 1998), 1, 10, 26; NEJM 338 (1998), 125-6. On
genomics, drugs and developmental biology, NatBio 16 (1998),
129, 209, 211, 243-5; Cantor, CR. "How will the Human Genome
Project improve our quality of life?", NatBio 16 (1998),
212-3.
Smithkline Beecham has said it has stopped use of the HGS gene
database, as alternatives have now come and it has exhausted searching
it, Nature 391 (1998), 621. On ESTs ad comparative genomics,
TIG 14 (1998), 4-7. SB and GlaxoWellcome have united genome
efforts, NatBio 16 (1998), 228. Monsanto and Millennium
Pharmaceuticals are also working on plant genomics together, NatBio
16 (1998), 116+. In India a university dispute has
prevented the establishment of a plant genome center, Nature
391 (1998), 424.
The genome of Mycobacterium tuberculosis which causes
tuberculosis has been sequenced, Science 279 (1998), 25.
On the genome of Helicobacter pylori, a conserved bacterium,
NatBio 16 (1998), 216-7. A sequence of 1.9 million bases
from Arabidopsis has been finished, Nature 391 (1998),
438-9, 485-8. About 3% of the human genome sequence has been sequenced
in databases as contiguous sequences, Science 279 (1998),
36-7; new technology may be needed to speed sequencing even further,
Science 279 (1998), 23; TIG 14 (1998), 50-1. Genes
that seemed useless may be working in subtle ways, NS (17
Jan. 1998), 7. A linkage map of the canine genome has been made,
Genomics 46 (1997), 326-36.
On the HGDP, Science 279 (1998), 14; Cavalli-Sforza,
LL. "The DNA revolution in population genetics", TIG
14 (1998), 60-5; and origins of humans, SA (Jan. 1998),
30, 32; TIG 14 (1998), 7-8. Canada has apologized to native
people for past abuses, Lancet 351 (1998), 194. A world
map of endangered languages is SA (March 1998), 26. An
interview with Claude Levi-Strauss is SA (Jan. 1998), 38,
40.
The US DOE Human Genome Program Report of 1997 includes several
abstracts describing ELSI projects such as educating judges and
developing curriculum, pp.45-57 in Part II. The US ELSI group
has developed a core curriculum for what doctors should
know about genetics, JAMA 279 (1998), 735-6; NatMed
4 (1998), 379.
Sequencers have endorsed the US policy to release genome data
as soon as it is found, Science 279 (1998), 1621. A review
of the 13 complete microbial genome sequences that have
been published is Nature 392 (1998), 339-42; and a new
sequence, Deckert, G. et al. "The complete genome of the
hyperthermophilic bacterium Aquifex aeolicus", Nature
392 (1998), 353-8. The results from the Helicobacter pylori
genome are reviewed in NEJM 337 (1998), 832-3. A series
of papers on plant genetics and genome analysis are around one
in PNAS 95 (1998), 1983-2032. In several months Perkin-Elmer
Applied Biosystems Division will introduce a 96-lane version of
the ABI model 377 DNA sequencer, which should increase
speed and lower costs of sequencing and a neural net-based lane
tracking system. A method to separate DNA fragments by size has
been improved, NS (7 Feb. 1998), 10. On bioinformatics,
TIBTECH 16 (1998), 104-7; and the future of the GDB, Science
279 (1998), 1611-2. On the Japanese genome project, Nature
392 (1998), 219. A need for data quality is made in Science
279 (1998), 1115. The genomes of major pathogens will also be
made public, NS (14 Feb. 1998), 5.
A paper on prospects of making money from isolated and inbred
human populations is NatBio 16 (1998), 337-40. As they
say (and as the language may offend!), what is increasingly in
dispute is the way that human "resource" is exploited.
Ancient island tools suggest Homo erectus was a seafarer,
Science 279 (1998), 1635-7. Archaeological evidence suggests
that prehistoric North America was often the host to wars, Science
279 (1998), 2038-9. An elaborate city structure has been found
in Chihuahua, Mexico, from 3000 years ago, Science 279
(1998), 1661-4. On genetic demography, PNAS 95 (1998),
1961-7.
Ethics comments include Science & Engineering Ethics
4 (1998), 131-4; and a paper asking whether the project is racially
representative from the cells used is Jackson, F. "Scientific
limitations and ethical ramifications of a non-representative
Human Genome Project: African American response", Science
& Engineering Ethics 4 (1998), 155-70; see also Dukepoo,
FC. "An American Indian Perspective", Science &
Engineering Ethics 4 (1998), 171-80. A paper on the HGP is
Kirby, M. "Looking forward, looking back", MJA
168 (1998), 393-5.
A comment on whether there is a HGDP is NatGen
18 (1998), 307-8. There are questions on whether India's
recent guidelines on use of genetic information and for sampling
will protect the gene pool from overseas exploitation is NatMed
4 (1998), 653. A book review on the history of Europe's conflict
with tribal people is Nature 393 (1998), 533. Studies of
populations and genetic disease are discussed in TIG 14
(1998), 218-9; Science 280 (1998), 1306-7. The old cave
paintings in Australia that were claimed to be 100,000
years old have been found to only be 10,000 years - though still
a long time longer than European colonizers, Science 280
(1998), 1351. Aboriginal groups have warmed to studies of early
Australians, Science 280 (1998), 1342-3. Genetic links
between ancient Eurasians and Native Americans are found, so that
not only Asians immigrated, Science 280 (1998), 520.
The announcement in May 1998 by Perkin-Elmer (PE, Norwalk, CT)
and The Institute for Genomic Research (TIGR, Rockville,
MD) of the formation of a new commercial venture to "substantially"
sequence the human genome in three years has been met with
some skepticism both from competing commercial operations and
those involved with the publicly funded genome efforts, NatBio
16 (1998), 491, 610; GenEng News 18 (1 June 1998), 1, 16,
50; Nature 393 (1998), 101; NS (23 May 1998), 4;
Economist (16 May 1998), 95-6; Time (29 June 1998),
45; Lancet 351 (1998), 1566: BMJ 316 (1998), 1558;
and public funded efforts will also increase investment, Science
280 (1998), 994-5, 1185, 1515; JAMA 279 (1998), 1933-5;
Nature 393 (1998), 195, 201, 399, 722. See the paper Venter,
JC. et al. "Shotgun sequencing of the human genome",
Science 280 (1998), 1450-2; also pp. 814-7. The French
GeneScope center will also move to sequence more of the human
genome, Science 280 (1998), 30-1.
More than 1.3 million ESTs corresponding to mouse and human genes
are now available and accessible through the EST division
of the National Center for Biotechnology Information (Bethesda,
MD, USA), NatBio 16 (1998), 519. On development of pharmacogenomics,
NatBio 16 (1998), 492; BMJ 316 (1998), 1930; NS
(21 March 1998), 18-9; and bioinformatics NatBio 16 (1998),
625-7; PNAS 95 (1998), 5848. Private money will supplement
the NIH and government money in improving public genome databases,
Science 280 (1998), 667. On a method for mapping complex
traits, two point linkage analysis, AJMG 78 (1998), 366-83.
A meeting report on bioinformatics, TIBTECH 16 (1998),
104-7. The construction of YAC-based mammalian artificial chromosomes
is discussed in NatBio 16 (1998), 431-9.
A review of the genome sequence of Mycobacterium tuberculosis
is Cole, ST. et al. "Deciphering the biology of Mycobacterium
tuberculosis from the complete genome sequence", Nature
393 (1998), 537-44; 515-6; Lancet 351 (1998), 1789. A new
genetic map is Knapik, EW. et al. "A microsatellite genetic
linkage map for zebrafish (Danio rerio), NatGen
18 (1998), 338-43; 345-9; 301-3. The genomics of a hot water bacteria,
Aquifex aeolicus is discussed in NatGen 19 (1998),
4-6. A review of the L1 retrotransposon is NatGen 19 (1998),
19-24. The fruit fly Drosophila melanogaster is being sequenced
by TIGR-Perkin-Elmer, Nature 393 (1998), 296. A discussion
of a plant genome initiative is reviewed in The Plant Cell
10 (1998), 488-93. On genetics research in cat, Science
280 (1998), 1841; and evolution, Science 280 (1998), 672-4;
PNAS 95 (1998), 5849-56. On the future of HUGO,
NatGen 19 (1998), 1-2, 113-4. The HGP is being applied
to cardiovascular research, Lancet 351 (1998), 1035.
A role for HUGO is discussed in NatGen 19 (1998),
222. A report on the TIGR and Craig Venter project to sequence
the human genome in 3 years is SA (August 1998), 30-1;
TIG 14 (1998), 259-60; Science News 153 (1998),
334-5. The company will be called Celera Genomics Corporation,
Nature 394 (1998), 714. The San Diego company Incyte Pharmaceuticals
has announced a 2 year US$200 million project to identify protein
coding regions of the genome, Science 281 (1998), 1121.
Canada has proposed another genome project, with C$175
million a year by many ministries, Science 281 (1998),
20-1; Lancet 352 (1998), 44. A review of genomics and the
world economy is Science 281 (1998), 925-6. China is accelerating
research into genome projects, Nature 394 (1998), 109.
The sequence of the bacteria causing syphilis has been
found, Fraser, CM. et al. "Complete genome sequence of Treponema
pallidum, the syphilis spirochete", Science 281
(1998), 375-87, 324-5; JAMA 280 (1998), 594 Genome models
are discussed in NS (18 July 1998), 36-9. The lessons for
tuberculosis from the genome sequence of Mycobacterium tuberculosis
are helping understand the disease, Science News 153 (1998),
375. On the history of the genetic code, Science 281 (1998),
329-31. On analysis of HGR data, EN (1 Sept. 1998), 32,
54, 56. The genes of Jewish priests are discussed in Nature
394 (1998), 138-9.
A review is Schork, NJ. et al. "The future of genetic epidemiology",
TIG 14 (1998), 266-71. A study of genetic diversity in
lipase gene is NatGen 19 (1998), 233-40; and in Icelandic
persons considering privacy, Science 281 (1998), 890-1.
A book review on cross-cultural genetics is AJHG 63 (1998),
289-90. Human evolution is discussed in NS (11 July 1998),
34-9; Science 281 (1998), 72-5. A review of an exhibit
on Maori at the British Museum that is sensitive to the
wishes of the Maori people is Lancet 352 (1998), 585-6.
A study of mitochondrial and nuclear genes in the Pacific Islands
suggests an initial remote Oceania settlement followed
with male-based gene flow to near Oceania, AJHG 63 (1998),
613-24. A simplified representation of ethnic populations is SA
(Sept. 1998), 30. Fossil faeces are providing more ancient DNA
than amber, Science 281 (1998), 319-20, 402+.
A conference report from the 4th International Meeting on the
Human Genome Project, held in Valencia, Spain, 190-21 Oct.
1998 is Lancet 352 (1998), 1448. D.M. was among a list of two
dozen invitees who joined in a discussion of genetic technology,
gene therapy, cloning and a variety of issues arising from the
completion of the genome project. Ian Wilmut and Craig Venter
were honoured by the Valencian government for their work, and
both made a number of statements. Venter predicted that within
5 years individual genotypes will be used for drug design and
therapy. Researchers working on gene therapy however, were still
seeking for reliable long term expression of genes in patients.
Issue 7 of Law and the Human Genome Review (1997), pp.
1-250, includes several papers on the UN Declaration on the Protection
of the Human Genome, and on the European Convention (see also
this issue EJAIB by Oszunay). A document from the US ELSI
project on genetic testing can be downloaded from <www.pbs.org/gene>.
On general ELSI issues, NatGen 20 (1998),15-7.
The government-funded HGP should be finished by 2003, and a general
sequence is now called for by 2001, a similar year to when
Celera should have finished the sequence, BMJ 317 (1998),
834; Science 281 (1998), 1774-5; 282 (1998), 53-4; Nature
395 (1998), 207. NIH (Bethesda, MD) director Francis Collins has
announced a new five-year plan for the next phase of the Human
Genome Project (HGP), NatBio16 (1998), 1004. As well as
focusing on functional genomics, the plan accelerates current
HGP sequencing efforts to match industry's 2001 target date for
a working or shotgun human genome sequence, with completion of
its full sequence by 2003. One of the goals of Genome II is the
creation of a genome-wide map of 100,000 single-nucleotide polymorphisms
(SNPs). This puts the public genome program in competition with
another leading genomics company, Genset (Paris), which plans
to produce a 60,000 "bi-allelic" SNP map. A further
part of the Human Genome Project is to look at the three million
differences in the genetic code that identify each person, NatBio16
(1998), 793; Science 281 (1998), 1787-9. Incyte intends
to invest over the next two years US$200 million in an effort
to sequence the protein-coding regions of the human genome and
"gather SNP data for every human gene." A group
at Incyte is planning to release a complete gene map within a
year, including single-nucleotide polymorphism (SNPs), and it
will acquire intellectual property rights from Hexagen and Life-Seq,
which includes 3 million DNA sequences at present, GEN
(15 Sept. 1998), 6, 23.
The Icelandic parliament (Althingi) considered a bill to create
a nation-wide computerized database of health records in Iceland.
If established, the database would provide a platform for the
expansion of the population genetics-based business of deCODE
Genetics, NatBio16 (1998), 896; NatGen 20 (1998),
99-101. An Apache tribe has also signed an agreement with geneticists,
via informed consent, NS (29 August 1998), 5. A discussion
of the analysis of the analysis of the frozen Iceman is NS
(10 Oct. 1998), 40-3. A legal analysis of indigenous peoples in
international law is Amer. J. Int. Law 92 (1998), 414-57.
A human skeleton from 55,000 years ago in Egypt is hoped to be
a missing link in the spread of modern human beings out of Africa,
NS (10 Oct. 1998), 12. Female gene flow may distinguish
Hindu castes, Nature 395 (1998), 651. A genetic history
of China is emerging from many genetic studies, Nature
395 (1998), 636-8.
The Confederated Salish and Kootenai Tribes and the Montana/Wyoming
Area Indian Health Board hosted a conference on North American
Genetic Research and Native Peoples in Polson, Montana at the
Kwataqnuk Resort on October 11-12, 1998. For details, Debra Harry,
Indigenous Peoples Coalition Against Biopiracy, PO Box 72, Nixon,
NV 89424, USA; Email: dharry@niec.net <http://www.niec.net/ipcb>
Genetic maps are being made for better websites, Nature
395 (1998), 842-3. Genetic variation is being used for drug development,
Science 281 (1998), 1820-1; SA (Oct. 1998), 17-8;
so-called pharmacogenomics, NatBio16 (1998), 885. On plant
genomics, NatGen 20 (1998), 6-7; and general improvements
on high output biology, NatGen 20 (1998), 5-6.
Iceland is selling exclusive rights to one company
for genetic studies over the next 12 years, Nature 396
(1998), 395; NS (5 Dec. 1998), 3, 20-1; Science
282 (1998), 859, 1993. There is controversy over the danger to
privacy and misuse of the information. More comments on the Iceland
genetic studies deal are in GenEthics News 26 (Oct/Nov
1998), 5. In fact a study on Iceland breast cancer families has
questioned the risks of BRCA1 and BRCA2, BMJ 317
(1998), 1174. A paper on the ethical implications of genomic research
is Kirby, M. "Meeting our friend, the genome", Law
and the Human Genome Review 8 (1998), 60-70. The key points
of the HUGO statement on DNA sampling (see earlier EJAIB
8 (1998)) are reproduced in BME 142 (1998), 5. Also on
ethical issues of the HGP, JAMA 280 (1998), 1532-8.
The US DOE and Celera have not yet agreed on a memorandum
of understanding on the competing efforts to sequence the human
genome, Nature 397 (1998), 93; NS (2 Jan. 1999),
34-5. A report on the new goals of the US government project is
Collins, FS. et al. "New goals for the US Human Genome Project:
1998-2003", Science 282 (1998), 682-9. It includes new goals
for the ELSI program, which will be looking at the implications
of human genetic variation, integration of clinical genetic services,
use of genetics outside of clinics, looking at new perspectives
in philosophy, theology and ethics, and look at socioeconomic,
ethnic and racial factors.
The 97 Mb genome sequence of the nematode Caenorhabditis
elegans has been completed by a consortium, The C. elegans
Sequencing Consortium, "Genome sequence of the nematode C.
elegans: A platform for investigating biology", Science
282 (1998), 2012-8; also pp. 1972-4; 2011-2050; 2159; Nature
396 (1998), 620-1; NS (5 Dec. 1998), 33-5. The Genome Research
Center of RIKEN in Japan has released a mouse DNA encyclopedia
of 20,000 ESTs, Nature 397 (1999), 98-9. In general on
the use of molecular libraries, Immunology Today 19 (1998),
524-7. In 1998 the Trends journals published a 32 page
guide to bioinformatics; also Science 282 (1998), 635-6.
A physical map of 30,000 human genes has been assembled, Science
282 (1998), 744-6.
The complete sequence of Rickettsia prowazekii
is important as the agent of typhus, and also it may be a relative
of a possible mitochondrial precursor, Andersson, SGE. "The
genome sequence of Rickettsia prowazekii and the origin
of mitochondria", Science 282 (1998), 1126-32; Lancet
352 (1998), 1604; Science 282 (1998), 1243. A hydrogenosome
has a genome, Nature 396 (1998), 527-8; and they produce
hydrogen. A 1Mb organism genome is in Stephens, RS. "Genome
sequence of an obligate intracellular pathogen of humans: Chlamydia
trachomatis", Science 282 (1998), 754-9; pp. 638-9;
Science News 154 (1998), 261. There was 6-7% genetic difference
in two bacteria of the species Helicobacter pylori, Nature
397 (1999), 176-80. A review of the knowledge of the 53 strains
of rubella virus so far sequenced is Lancet 352 (1998),
1799. In general on microbial genome sequencing, BMJ 317
(1998), 1568-71.
A series of papers on genomics are in Science
282 (1998), 651-89. On the plasticity of genomes, Nature
396 (1998), 522-3; and plant genomics, Plant Cell 10 (1998),
1771; Science 282 (1998), 656-9; and a genome map of Arabidopsis
thaliana is in Science 282 (1998), 662-81.
A book review of Crawford, MH. The Origins of
Native Americans: Evidence from Anthropological Genetics (Cambridge
University Press, 1998) is AJHG 63 (1998), 1566. On the
origins of Pacific Island and Asian populations, PNAS 95
(1998), 9047-52; TIG 14 (1998), 445. Asian DNA origins
are discussed in Science News 154 (1998), 212. There is
genetic evidence for a higher female migration rate in humans,
NatGen 20 (1998), 278-80, 219-20. On isolated populations
and genetics, Science 282 (1998), 1658-9. A book review
of Eve Spoke is NS (5 Dec. 1998), 46-7. DNA analysis
has supported the biblical story of Jewish priesthood, Science
News 154 (1998), 218-9.
Several papers on ELSI issues of HGP are in Human Genome
News 10 (Feb 1999), 13-5; Assia 3 (No. 2, 1998), 30-33;
CQHE 8 (1999), 226-37. Russian genome scientists
have adopted an ethical statement, Nature 398 (1999), 362.
A report on Indian genomics is Science 283 (1999), 309.
A review of Human Genome Sciences is GEN (1 March 1999),
22. In general on the expected knowledge form the HGP, GEN
(15 Feb. 1999), 11, 26, 36: and the five stages of the Human Genome
Project, NatBio 17 (1999), 112. In general on genomics,
BMJ 318 (1999), 341-2; AJHG 66 (1999), 1-13. On
genome funding, Science 283 (1999), 610-1.
The release of a working draft of the human genome is expected
in February 2000 by a UK/US collaboration, with the final
sequence by 2003; Lancet 353 (1999), 1078; Science
283 (1999), 1822-3. A review of the methods is Science
283 (1999), 1867-8. A review is Giaver, G. et al. "Genomic
profiling of drug sensitivities via induced haploinsufficiency",
NatGen 21 (1999), 278-83. On sequence analysis, Science
283 (1999), 652-3.
The sequence of Deinococcus radiodurans has been released,
and it is 3 million bases long and similar to other bacteria despite
its ability to survive huge radiation doses, Science 283
(1999), 1105-6. A comparison of two complete genome sequences
of H. pylori is discussed in GEN (1 Jan. 1999),
17, 36. Genetic and physical maps of Bacillus subtilis
are in Genetics 151 (1999), 1239-44. On functional genomics,
GEN (1 Feb. 1999), 1, 3, 31. More comments on the completion
of the C. elegans genome sequence is Human Genome News
10 (Feb 1999), 8; TIG 15 (1999), 51-8; Science News
154 (1998), 372.
Celera has announced it will finish the rice genome
in 6 weeks [by next issue?!], shocking the rice genome project
in Japan and other countries, Nature 398 (1999), 543, 545.
Plant genomics is developing rapidly, TIG 15 (1999), 85-7.
Japan is also attempting to sequence and patent disease-related
genes, Nature 398 (1999), 644; while aother international
consortium is planning a free SNP map of the genome, Nature
398 (1999), 545-6. The European Bioinformatics Institute is making
its expression gene data open, Nature 398 (1999), 646.
Drosophila researchers have signed an agreement with Celera,
Science 283 (1999), 767. An encyclopedia of mouse
genes is reported in NatGen 21 (1999), 191-95; and an action
plan for mouse genomics is in NatGen 21 (1999), 73-5.
Population genetics is discussed in PNAS 96 (1999), 1170-2;
AJHG 66 (1999), 31-9. A study of the origin of native
Americans from Lake Baikal area suggested by Y chromosome studies
is AJHG 66 (1999), 817-31; Science 283 (1999), 1439-40.
On Japanese genetic roots, Science 283 (1999), 1426-7.
A review of making family trees from gene families is NatGen
21 (1999), 66-7; also Science 283 (1999), 2027-8; Nature
398 (1999), 283-4. Genome phylogeny can also be based on gene
content, NatGen 21 (1999), 108-10. A draft complete human DNA sequence will be ready by spring 2000, Science 284 (1999), 1439-40. The Wellcome Trust and several companies are funding a SNP Consortium which will create a database on genetic markers, BMJ 318 (1999), 1093; Science 284 (1999), 406-7; NS (17 April 1999), 12. Population genetics is discussed in Science 284 (1999), 267-8; AJHG 64 (1999), 1473-4; NatGen 22 (1999), 78-81. On the sequencing of viral genomes, NatMed 5 (1999), 484-5. A radiation hybrid map of the rat genome with 5255 markers is published in NatGen 22 (1999), 3-4, 27-36. Japan is attempting to catch up with the rapid advances in the genome project, Nature 399 (1999), 96; and on the falling stock value of the French genome company Genset, Nature 399 (1999), 185-6. The distribution of haplotypes from a chromosome 21 region have been used to trace multiple prehistoric human migrations, PNAS 96 (1999), 3796-800. The proceedings of a 1996 International Symposium have been published, Omoto, K., ed., Interdisciplinary Perspectives on the Origins of the Japanese (International Research Center for Japanese Studies, No. 11-B, 1999, 349pp.). It includes various methods including DNA studies. An Inca mummy that is 500 years old is being used for research, Science 284 (1999), 427. The interaction between environment and behaviour of 2.5 million year old Bouri hominids is discussed in Science 284 (1999), 625+. A paper on the comparison that will be made between genes of humans and other great apes is NS (15 May 1999), 26-30. On the origin of life, Nature 399 (1999), 217-8. A paper on the HGDP is Dodson, M. & Williamson, R. "Indigenous
peoples and the morality of the human genome diversity project", JME
25 (1999), 204-8. Several papers on ethical issues in anthropology and
archaeology are in Science and Engineering Ethics 5 (July 1999),
307-374.
A book review on the ethics of the genome project is in HCR
29 (July-August 1999), 40-2. A retrospective view on the ELSI projects
of the US DOE is onlineat the doe site. The Shattuck lecture is Collins,
FS. "Medical and societal consequences of the Human Genome Project", NEJM
341 (1999), 28-37.
Japan has double genome project funds over 5 years, Nature
400 (1999), 389. A French report has called for more genetics research,
Nature 400 (1999), 199. The Wellcome Trust proposal to develop the
Hinxton, Camridgeshire site with biotech companies has been rejected with
the verdict that new companies should be in the areas science parks not
in the countryside, Nature 400 (1999), 803. In the US commercial
firms have won government sequencing funds, Science 285 (1999),
310. A discussion of how Celera's strategy may make money is in Science
284 (1999), 1906-9. Pharmacogenomics is discussed in GEN 19 (15
June 1999), 17, 19, 21, 22, 34, 49.
In general on psychopharmacogenetics, AJHG
65 (1999), 606-10; and drugs from the genome, Science 285 (1999),
998-1001.
Less than 3 months after the start of the SNP Consortium,
more than 1400 SNPs have been identified in 181 genes thought to influence
disease susceptibility, NatGen 22 (1999), 231-8; 239-47; Lancet
354 (1999), 49; Science 285 (1999), 21. SNP ancestral alleles are
being detected by oligonucleotide arrays, NatGen 22 (1999), 164+.
On the use of arrays, NatGen 22 (1999), 211-2. The prospects for
whole-genome linkage disequilibrium mapping of common disease genes is
reviewed in NatGen 22 (1999), 139+. Sequencing technology using
bacterial artificial chromosomes (BACs) is discussed in PNAS 96
(1999), 9739-44. Japan is launching a national SNP program based on at
least 50 Japanese personsf DNA, Nature 400 (1999), 6.
There is stiff competition over the completion of
the Drosophila genome project this year, Nature 400
(1999), 699. The complete sequence of chromosome 3 of Plasmodium falciparum
has been released, Nature 400 (1999), 532-8. The malarial mosquito
is being targetted also, Science 285 (1999), 508-9. The Dictyostelium
genome project is reviewed in TIG 15 (1999), 294-7. What we can
learn from slime mould for disease is discussed in AJHG 65 (1999),
25-30. The question why organelles have retained geomes is discussed
in TIG 15 (1999), 364-70. A YAC-based physical map of the mouse
genome is in NatGen 22 (1999), 388-93. A radiation hybrid map of
the mouse genome is reported in NatGen 22 (1999), 384-7. A zA map
for sequence analysis of Arabidopsis thaliana genome is in NatGen
22 (1999), 265-70. Functional characterization of the S. cerevisiae
genome by gene deletion and parallel analysis is reported in Science
285 (1999), 901-6. Informatics is discussed in Science 285 (1999),
1226-8. Radiation hybrid mapping of the zebra fish genome is reported in
PNAS 96 (1999), 9745-50. On the anniversary of the discovery of
the genetic code, Nature 401 (1999), 19.
Genomes have revealed kinship between hippos
and whales, Science 284 (1999), 2081. On evolutionary genetics,
Science 285 (1999), 192-3. Neanderthal/Homo sapien connections have
been reexamined, NS (19 June 1999), 42-6; Science 285 (1999),
31-3. On human evolution, SA (August 1999), 13-4; Nature
400 (1999), 219-20; Science 285 (1999), 199, 1335-6. Prehistoric
bacteria have been revived from buried salt, Science News 155 (1999),
373.
A paper on ethics by the director of the US HGP is Collins, F. "The Human Genome Project: Tool of atheistic reductionism or embodiment of the Christian mandate to heal?", Science & Christian Belief 11 (1999), 99-111.
The sequence of human chromosome 22
has been completed in the first draft, and is on-line.
The paper is Dunham, I. Et al. "The DNA sequence of human
chromosome 22", Nature 402 (1999), 489-95; 445, 447-8,
467-8; Lancet 354 (1999), 1975. The paper was joint between
public and private researchers. The next is expected to be chromosome
21, and German and Japanese researchers are leading that effort,
Science 286 (1999), 2057-8. Berlin is promoting genomics,
Nature 402 (1999), 568. The billionth human genome base
was sequenced on 17 November, 1999, Nature 402 (1999),
331. The size distribution of homozygous segments in the genome
is reported in AJHG 65 (1999), 1489-92. Analysis of the
yeast genome is reported in Nature 402 (1999), 362-3,
413-8. A minimal Mycoplasma genome is discussed in Science
286 (1999), 2165-9.
Functional genomics in the UK has been
given more funds, Lancet 354 (1999), 2145; Nature Genetics
23 (1999), 375-6. France has launched a program to
gain financial benefits from genomics, Nature 402 (1999),
569. Pharmacogenomics is discussed in BMJ 319 (1999), 1286.
A mouse genomic project has been awarded US$21 million for sequencing
by the NIH, JAMA 282 (1999), 1805. On bioinformatics, GEN
20 (1 Jan. 2000), 3, 40.
A study of intracellular gene transfer
between genomes in legumes is PNAS 96 (1999), 13863-8.
Human evolution is discussed in Time (17 Jan. 2000),
40-9; Science 286 (1999), 2054-5; Current Biology 9 (1999),
1331-4. There are scientific concerns over the reburial of unidentified
Indian remains in the US under the Native American Graves Protection
and Repatriation Act, Science 286 (1999), 1285. Ice men
are discussed in Science 286 (1999), 1843; and analysis of a virus
in a Mummy, Science 286 (1999), 2071. In general on evolutionary
genetics, Nature 402 (1999), 365-6, 411-3; Science
286 (1999), 1829. The idea of genetic reconstruction of a Mammoth
is discussed in Time (1 Nov. 1999), 48-9.
The HGDP has generated much debate,
and a further paper on this is Resnik, DB. "The Human Genome
Diversity Project: Ethical problems and solutions", Politics
& Life Sciences 18 (1999), 15-24. A report from the geographic
patterns of mtDNA diversity in Europe is AJHG 66 (2000),
262-78. IBM has joined the SNP Consortium NatBio 18 (2000),
245. As discussed in the business news, genomic companies have
been expanding in the stock market, Nature 403 (2000),
4. On German funding problems, Nature 403 (2000), 584.
Celera
has claimed 90% of the human genome sequence and 97% of human
genes are in its database, BMJ 320 (2000), 206. They are
using public databases to try to accelerate the completion of
the sequence, Nature 403 (2000), 119. The sequence of chromosome
4 of Arabidopsis thaliana is in Nature 402 (1999),
769-77; and the full sequence of Campobacter jejuni is
in Nature 403 (2000), 665-9. The importance of structural
genomics for gene function analysis is discussed in NatBio
18 (2000), 283-7. The protein-protein interactions of yeast are
reported in Nature 403 (2000), 601-3, 623-7; in C. elegans,
Science 287 (2000), 52-3, 116-22; and on proteomics, Nature
403 (2000), 703, 715-20. A review of yeast biochemical genomics
is TIG 16 (2000), 49-53. Grass-roots genomics is discussed
in Nature Genetics 24 (2000), 5-6; and on evolutionary
studies, Science 287 (2000), 605-6. A book review on the
Genome is AJHG 66 (2000), 21; and one of Genetic
Maps and Human Imagination is NS (29 Jan. 2000), 48.
Technologies are reviewed in Science 287 (2000), 675-94.
Mouse geneticists have asked for unified mechanisms for exchange,
Nature 403 (2000), 236. DNA loss and genome size are discussed
in Science 287 (2000), 1060-2.
China has set up a hominid museum, Science
287 (2000), 221. On human evolution, Time (17 Jan. 2000),
40-9; SA (Jan. 2000), 56-62. Archaeology in the Holy Land is discussed
in Science 287 (2000), 28-35. The finding of a Roman artefact
in South America confirms that Romans had contact with South Americans,
NS (Jan. 2000), 7. The question of survival of tribal knowledge
is discussed in Science 287 (2000), 44-5. Discussion of
the idea of life origins in space is NS (22 Jan. 2000),
3.
;Critics are challenging Celera's claims that it finished the raw DNA sequencing on the human genome sequence, Nature 404 (2000), 691-2; Time (10 April 2000), 45; (17 April 2000), 50; Science 287 (2000), 2136-8. The relationship between the private and public genome projects is discussed in Science 287 (2000), 1723-5; NS (March 2000), 3 (also see Patenting and Business section). Despite attempts to join the Celera and public projects, an alliance did not emerge, Nature 403 (2000), 815-6; 404 (2000), 111, 117, 317. There is an investigation on whether any NSF grants were used to develop the DNA sequencing machines at Caltech that are now sold by Perkin Elmer, Science 287 (2000), 1374-5.
;The Drosophila genome sequence is finished due to a collaboration between UC Berkeley and Celera, Myers, EW. Et al. gA whole genome assembly of Drosophilah, Science 287 (2000), 2196-2204; 1374, 2173-4, 2181-4; Nature 404 (2000), 442-3;Nature Cell Biology 2 (2000), E53-4; Science 287 (2000), 2216-21; NatBio 18 (2000), 365; JAMA 283 (2000), 1554-5; Nature Genetics 24 (2000), 327-8. The worm C. elegans has an Internet site (www.wormbase.org). On comparative genomics, Science 287 (2000), 1777-82, 2204-15; NS (March 2000), 38-41. Genomic searching has led to better understanding of taste, Nature 404 (2000), 552-3.
;The bacteria Neisseria meningitidis A strain and B strains have been sequenced, Science 287 (2000), 1809-15; Lancet 355 (2000), 1163; Nature 404 (2000), 451-2, 502-6. The genome of Caulobacter crescentus has been sequenced, Science 288 (2000), 1572-3. Mouse sequencers are using a shotgun method, Science 287 (2000), 1179-81. A review of untapped resources in microbial genomes is TIBTECH 18 (2000), 14-6. High resolution linkage of the cytogenetic and physical maps of the human genome is reported in Nature Genetics 24 (2000), 339-40.
A review from the SNP consortium is Science 287 (2000), 1898-9. Pharmacogenomics is discussed in BMJ 320 (2000), 987-90; GEN 20 (15 March 2000), 1, 13, 39, 50, 74; PharmaJapan 1694 (24 April 2000), 1-4; Pharmacogenetics 10 (2000), 1-3. A report on functional genomics and the Novartis Genomics Institute is ACUMEN 1 (2000), 30-41. On functional genomics, Nature 404 (2000), 715-8. Proteomics is discussed in GEN 20 (1 April 2000), 15, 34, 49. Music software may be useful for genome sequencing, Nature 404 (2000), 694. On informatics, Science 287 (2000), 1951.
The role of the US Dept. of Energy in the genome project continues, Nature 404 (2000), 4, 222. Genomics is being developed rapidly in East Asia, NatBio 17 (1999), 278-9. Ontario has approved C$74 million for genome projects, Nature 404 (13 April 2000). The UK is planning to establish a partial population genetics database, NatMed. 6 (2000), 359-60.
The question of what linguistics tells us about human evolution is discussed in NS (26 Feb. 2000), 36-40. Irish origins have been mapped using the Y chromosome, Nature 404 (2000), 351. A review of the distribution of human genetic diversity is AJHG 66 (2000), 979-88. Sunny days were the best for preserving ancient DNA in resin, NS (19 Feb. 2000), 23. Stony tools have revealed Homo erectus were making tools at 803,000 years ago from cobbles the result of a meteorite in southern China, Science 287 (2000), 1566-7.
A new book is Grisolia, S. ed., Current Options for the Human Genome Project (Fundacion BBV, 2000, 317pp. ISBN 84-95163-37-6), which includes 25 papers from a Valencia conference in 1998. The US DOE and NIH ELSI programs are separating, Nature 405 (2000), 388.
A new book from Eubios Ethics Institute is Macer, DRJ., ed., Ethical Challenges as we approach the end of the Human Genome Project, Eubios Ethics Institute 2000(ISBN 0-908897-15-4, 122pp., NZ$30) includes 11 papers from persons in different countries and traditions. An extensive review of the HGP is in Newsweek (10 April 2000), 32-44. A discussion of the future of sequencing DNA at home is Nature 404 (2000), 21. Also on the subject, book reviews of Ridley, M. Genome: The Autobiography of a Species in 23 Chapters (HarperCollins 2000) are Newsweek (28 Feb. 2000), 41; SA (April 2000), 114-5.
The genome sequence of Arabidopsis thaliana has been finished, The Arabidopsis Genome Initiative, “Analysis of the genome sequence of the flowering plant Arabidopsis thaliana”, Nature 408 (2000), 796-815, 791-5; Science 290 (2000), 2054-8, 2071; 2105-10; NS (2 Dec. 2000), 36-9; (16 Dec. 2000), 14-5. The genome of E. coli 0157 has an extra 1387 genes compared to the laboratory version, Nature (26 Jan. 2001). The genome sequence of Halobacterium species NRC is in PNAS 97 (2000), 12176-81. A first report of chicken genes and chromosomes is Cytogent. Cell Genet. 90 (2000), 169-218.; Rapid sequencing of mouse genome means it is difficult to deposit the data every 24 hours onto the Internet, Nature 408 (2000), 758-9. Further analysis of the functions of genes in C. elegans is Nature 408 (2000), 325-30, 331-6.
Plans for sequencing of a second Drosophila species genome, of D.pseudoobscura have been announced, Nature 408 (2000), 396. The Wellcome Trust is sequencing zebrafish, Nature 408 (2000), 503; Science 291 (2001), 1671. China and Denmark are teaming up to sequence pig, Science 290 (2000), 913-4. Germany is targeting bacterial genomes, Nature 408 (2000), 632-3; 393. Genomic medicine is discussed in JAMA 284 (2000), 2581-2, 2642; NEJM 343 (2000), 1408-9.
A general paper on community is Davis, DS. “Groups, communities, and contested identites in genetic research”, HCR< 30 (Nov. 2000), 38-44. On use of DNA collections, BMJ 321 (2000), 1146-9. A case of US harvesting of blood samples for genetic research in China is reported in Int. Herald Tribune (21 Dec. 2000). DeCode genetics in Iceland is discussed in GeneWatch 13 (Winter 2000), 4-6; NEJM 343 (2000), 1734-5. They have been reporting some genes, SCRIP 2595 (24 Nov. 2000), 24. The Estonian Parliament is considering a genome law to support the use of genetic data.
The theory of humans developing in Africa has been supported by the most thorough genetic studies of 53 person’s mitochondrial DNA, Ingman, M. et al. “Mitochondrial genome variation and the origin of modern humans”, Nature 408 (2000), 708-13, 652-3; NS (18 Nov. 2000), 48-9. Y-chromosomal diversity in Europe is primarily influenced by geography rather than by language, AJHG 67 (2001), 1526-43; Science 290 (2000), 1080-1. The history of Y-chromosome in Melanasia and Australia is independent, AJHG 67 (2001), 173-90. Columbian maternal and paternal genetic histories may differ, AJHG 67 (2000), 1062-6; as may Europeans, AJHG 67 (2000), 1376-81. Gene mapping is discussed in PNAS 97 (2000), 12389-90. Mitochondrial genes in plants often move to the nucleus, Nature 408 (2000), 302-4. The fate of duplicate genes in evolution is reviewed in Science 290 (2000), 1151-5. The Y chromosome perspective is discussed, Science 290 (2000), 1155-9; Science News 158 (2000), 295.
On use of ancient DNA, AJHG 67 (2000), 287-90; Science 290 (2000), 2065. Japanese researchers are considering to probe Tutankamon’s DNA, Nature 408 (2000), 283.
The publication of the human genome sequence in 8 February issue of Nature and 16 February issue of Science has seen the debate continue between the public project (in Nature) and the Celera project (in Science), Nature 409 (2001), 745, 747-8, 769; Science 291 (2001), 223-4; NatBio 19 (2001), 1; Lancet 357 (2001), 81. On the publications, Nature 409 (2001), 756-7, 813-955;NatGen. 27 (2001), 127-8; Science 291 (2001), 1153+, 1304-51. They are also on-line.
A general review is Collins, FS. & McKusick, VA. "Implications of human genome project for medical science", JAMA 285 (2001), 540-4. Some ethical issues are discussed in Mauron, A. "Is the genome the secular equivalent of the soul?", Science 291 (2001), 831-2. Also see book reviews of Cracking the Genome in NS (27 Jan. 2001), 46; Nature 409 (2001), 765-6. Postgenomics is called for in NatMed. 7 (2001), 11-3. Genetic information will pose many questions for diagnosis, Lancet 357 (2001), 249-50; JAMA 285 (2001), 551-5. On functional genomics Nature 409 (2001), 571-2. TIGR has sequenced Theileria parva, that causes East Coast Fever, The Scientist (8 Jan. 2001), 16. A discussion of fish genome projects is NatGen. 27 (2001), 8-9. On the Japanese chimpanzee genome project, Nature 409 (2001), 651-2. The complete mitochondrial DNA sequences of two extinct Moas are in Nature 409 (2001), 704-7. There is massive gene decay in the leprosy bacillus, Nature 409 (2001), 1007-11. There are some differences between posted and published sequence data, Science 291 (2001), 837. On a full length mouse cDNA collection, Nature 409 (2001), 685-90. On the E.coli 0157 sequence, Lancet 357 (2001), 286. Indian genomics is being given a further billion rupees, Nature 409 (2001), 973. The Howard Hughes Medical Institute is building a bioinformatics centre, Science 291 (2001), 803. On pharmacotherapeutics, MJA 174 (2001), 48. In general on genomics, Nature 409 (2001), 545. Ancient DNA studies from a 60,000 year old human remain in Australia have a few questions for the out of Africa theory of human origins, Science 291 (2001), 230-1; NS (13 Jan. 2001), 6. As reported in the last issue of EJAIB, the draft human genome sequence is the topic of special issues of Nature (8 Feb. 2001), and Science (16 Feb. 2001). It includes an estimate that there may only be 30,000 human genes, Science 291 (2001), 1255-7.Some papers discussing the future of genomics include: Science 291 (2001), 1153, 1155-7, 1177-1207. . A number of papers continue to discuss the impact of the human genome project, including Bioethics Examiner 5 (Spring 2001), 1-4. A discussion of the implications of the human genome project for Christians and an interview with Francis Collins is in Research News & Opportunities in Science and Theology 1 (April 2001), 1, 15-6. A discussion of how useful the currently available SNPs are is discussed in NatGen 27 (2001), 371-2. There is expected to be a continued growth in genomics, GenomeBiology.com 1 (2001), 1-6. An interview with US Senator Pete Domenici is Genome Technology (April 2001), 44-53. Canada is attempting to increase its outputs in functional genomics as it attempts to gain patents from the science, Science 292 (2001), 187. The future of the Human Proteome Organization (HUPO) is considered pessimistically in a Nature editorial, compared to HUGO, Nature 410 (2001), 725. The genome of the bacteria that causes leprosy is small, Mycobacterium leprae, Nature Reviews, Genetics 2 (20001), 237. Functional annotation of mouse genome sequences is in Science 291 (2001), 1251-55. The development of Lynx Therapeutics that intends to produce a million Lane sequencer, to quote "A Celera on a benchtop", is discussed in Genome Technology (April 2001), 46-50, 62. A report of a consultation from churches in Tonga about selling rights to their DNA to a biotechnology company is printed in BME 166 (2001), 8-10. Also on Tonga, The Scientist 15 (19 Feb. 2001), 1, 12. On ELSI issues, Australasian Science (August 2000), 1; Lancet 357 (2001), 535-7; JAMA 285 (2001), 721-2; NS (17 Feb. 2001), 3; The Scientist 15 (2001), 32-3. A book review on the social issues of the genome diversity is BioScience 51 (2001), 248-9. Spiritual aspects of the genome are debated in J. Rehabilitation 67 (2001), 33-7. A new book on ELSI issues is Mattei, JF., ed., The Human Genome (Council of Europe, 150pp., ISBN 92-871-4567-9). Individual genomic sequencing is the goal of a Cambridge UK company Solexa, Nature 411 (2001), 402. Papers on the completion of the human genome sequence and publication of the drafts include: Lancet 357 (2001), 489, 538; NatMed. 7 (2001), 266; BMJ 322 (2001), 381; NatBio 19 (2001), 207-9; NatMed. 7 (2001), 262, 281-3; NS (17 Feb. 2001), 4-7; (28 April 2001), 41; Science News 159 (2001), 100-1. In general on the HGP, NEJM 344 (2001), 862; Lancet 357 (2001), 531-7, 1537; NatMed. 7 (2001), 267-8, 275, 287-8; BMJ 322 (2001), 1371; JAMA 285 (2001), 2447-8; NS (28 April 2001), 40-1. On the Chinese genome sequencing effort, Nature 410 (2001), 10-2. A series of papers on the human genome in French are in La Recherche (June 2000), 25-45. On viruses in our genome, Science 292 (2001), 1848-50. There is still uncertainty over the number of human genes, between 30,000 to 60,000 genes are estimated, NS (12 May 2001), 16. On the origins of the discovery of the genetic code, Nature 410 (2001), 146-7. Wellcome has banned its grant recipients from using money to gain access to Celerafs genome sequence, Nature 410 (2001), 397. Relations between Celera and the public genome project are said to be improving, Nature 411 (2001), 726; Science 292 (2001), 1982-3; Current Biology 11 (2001), R202-3. Structural biologists plan to release all data within 6 month, Science 292 (2001), 188. Canada is seeking economic benefits from genomics in many species, Science (April 2001). Germany has increased funding to US$175 million over the next three years from the federal government to genomics research, Science 292 (2001), 29-30. On the environmental genome project, Environmental Health Perspectives 109 (2001), A22-3. Accuracy will have to improve to measure minor changes in genome sequences, as seen in the errors in the draft sequences of some genomes, NS (19 May 2001), 7. Immunogenetics and genomics, Lancet 357 (2001), 2037-41. On bioinformatics, Current Biology 11 (2001), R155-8. Celera has announced they have finished the mouse genome sequence, Science 292 (2001), 822-3; SCRIP 2640 (4 May 2001), 13. On the mouse genome NS (22 April 2001), 5; Nature 410 (2001), 121. The rat genome project collaboration is discussed in Science 291 (2001), 1872. The question of which mammalian species to chose for sequencing is discussed in Science 292 (2001), 2264-6; Current Biology 11 (2001), R416-7. On methodology, NatGen 27 (2001), 229-30; Science 292 (2001), 515-7. Building a genebank from published literature is discussed in Science 291 (2001), 2318-9. On the proteomics project, NS (14 April 2001), 5. Microbial genomes are discussed in TIBTECH 18 (2000), 14-6. The leprosy causing bacteria Mycobacterium leprae genome is discussed in Nature 409 (2001), 1007+; NS (24 Feb. 2001), 19. The sequence of a green algae, Guillardia theta, Nature 410 (2001), 1040-1, 1091-6; NatGen. 28 (2001), 6-7. The complete sequence of Caulobacter crescentus is reported in PNAS 98 (2001), 4136-41. Annotation of the Drosophila genome is in Nature 411 (2001), 259-60. Fungal genomics is progressing, Science 292 (2001), 2273-74. On the Schizosaccharomyces pombe genome, Science 292 (2001), 1280-1. Multiple pathways cooperate to suppress genomic instability in yeast, Nature 411 (2001), 1073+. The Y chromosomes of 12,127 persons from 163 populations for 3 markers support a common genetic history of 1 million years and that all came from a single origin in Africa, Science 292 (2001), 1151+. Human DNA diversity is discussed in Nature 411 (2001), 199-202; AJHG 68 (2001), 738-52, 1315-20; Science 291 (2001), 1733-4; Genetical Research 77 (2001), 143-51. The Indian caste system differences are seen in DNA fingerprints, NS (19 May 2001), 17. On mitochondrial genetic diversity in Portugal, Ann. Human Genetics 64 (2000), 491-506; and on extinct Tainos in the Caribbean, Ann. Human Genetics 65 (2001), 137-51. A new hominin genus has been reported in eastern Africa, Nature 410 (2001), 433-40. See a series of papers in Science 291 (2001), 1721-54. DNA from the Mungo man fossil in Australia is one problem for the Out of Africa hypothesis of origins of Homo sapiens, Australasian Science (March 2001), 29. Homo erectus lived in Java between 1.5 to 1 million years ago, Science News 159 (2001), 246; NS (14 April 2001), 26-9. Also on human origins, Science 291 (2001), 1051-2, 1460-1; Current Biology 11 (2001), 774-8, 779-83; Hereditas 133 (2000), 217-28. Membership of tribes is discussed in Columbia Law Review 101 (2001), 702-72. Abstracts from the presentations at the conference, 16-18 January, 2001, on "A decade of ELSI research" are in Special Supplement to JLME 29 (Summer 2001), 1-64. Reflections on the genomics revolution (in Spanish) are in Eidon 7 (Sept. 2001), 16-23. Questions on data and complex biology is discussed in NatMed. 7 (2001), 751. A call for benefits to all persons from genetics is BMJ 323 (2001), 284-5. Latvia has announced that it will attempt to explore genetic information from its population, Nature 412 (2001), 468. The definition of disease in the genomics era is discussed in Science 293 (2001), 807-8. The genome of Streptococcus pneumoniae has been sequenced by TIGR, Science 293 (2001), 410, 498-506. Viral genomics may be useful to develop a new class of products to treat disease, Biotechnology Letters 23 (2001), 1015-20. On use of microbial genomics for drug design, SA (May 2001), 46-53. The choice of animals for future sequencing is discussed in Science 292 (2001), 2264-6; 293 (2001), 409-10. Functional genomics of plant photosynthesis using Chlamydomonas reinhardtii is reviewed in Trends in Plant Science 6 (2001), 364-71. Corrections to the paper on the human genome sequence are in Nature 412 (2001), 565-6. A new map of the human genome called a haplotypes map is discussed in Science 293 (2001), 583-4. A study of human and chromosome 19 and related regions in mice is Science 293 (2001), 104-11. A study of haplotypes variation and linkage disequilibrium in 313 genes from 82 unrelated individuals of diverse ancestry is presented in Science 293 (2001), 481. SNPs should help find susceptibility genes, Science 293 (2001), 593-5; Nature 412 (2001), 105. The estimated number of human genes is widely variant between researchers still. The proteomics project is discussed in SA (August 2001), 11; TIBTECH 19 (2001), 178-81. Industrial scale genomics-based drug design and discovery is reviewed in TIBTECH 19 (2001), 288-92. South Africa is seeking partners for genomics, NatBio 19 (2001), 601-2. General comments on ethics and law and the human genome are in Law and Human Genome Review 14 (Jan. 2001), 19-24. The need for public access to data is made in NatGen 29 (2001), 4-6. Views of the genome are discussed in NS (15 Sept. 2001), 12. Genomic medicine is discussed in JAMA 286 (2001), 1635-9. On conquering mental illness in the age of the genome, Lancet 358 (2001), 1105-6. Pharmacogenomics journal is reviewed in Nature 413 (2001), 674-5. Comparisons of the human genome data sets from the two sequences is made in Science 293 (2001), 1238-9, 2394-5; NatGen 29 (2001), 88-91; Cell 106 (2001), 413-5; Current Biology 11 (2001), R680-2. A book review of Bioinformatics is NatGen 28 (2001), 308. Genome evolution is discussed in Science 293 (2001), 1969-70; Nature 413 (2001), 254. A new map of the mouse genome has sped up efforts to study mice, Nature 413 (2001), 444. New funds to the Sanger Centre on follow up research for the next 5 years include US$300 million from Wellcome Trust, Nature 413 (2001), 660. Isolated populations are discussed in NatGen 28 (2001), 309-10. A study of the Y-chromosome in Europe is in PNAS 98 (2001), 10244-9. Also on DNA and other studies of human history, Nature 413 (2001), 64-7, 358-9, 413-7; Science 293 (2001), 2368-9, 2373; Current Biology 11 (2001), R760-1. Insertional polymorphisms of full length endogenous retroviruses in humans are reported in Current Biology 11 (2001), 1531-5. A series of 5 papers discussing the HGP in India and developing countries are in Issues in Medical Ethics 10 (Jan. 2002), 140-153. A paper reviewing methods is Beskow, LM. Et al. gInformed consent for population-based research involving geneticsh, JAMA 286 (2001), 2315-21. The American Society of Human Genetics has made a response to allegations against James V. Neel in Darkness in El Dorado, AJHG 70 (2002), 1-10. On the origins of native Americans, AJMG 104 (2001), 347-8; and Gypsies, AJHG 69 (2001), 1314-31. Motorola and Celera are involved in the SNP project which has already identified 2 million SNPs, Nature 413 (2001), 9. Trends in reporting SNPs are discussed in Lancet 358 (2001), 2016. The future of GDB in Toronto is unsure, Nature 414 (2001), 384. The question of what genome projects should be funded is discussed in Science 294 (2001), 82-5. On the language to use to described different parts of the genome, Science 294 (2001), 86-7. Several papers on genomics are in Science 294 (5 Oct. 2001), 82-100, 799-800; JAMA 286 (14 Nov. 2001), 2289-95. There is immense data after the genomic sequencing efforts, Nature 414 (2001), 840-1. The methods to use to discover disease-related genes from the genome are explored in Nature 414 (2001), 705-6; JAMA 286 (2001), 2296-307, 2332-3. The DNA sequence of chromosome 20 is in Nature 414 (2001), 865-71, 854-5. A genetic definition of a human centromere is in Science 294 (2001), 30-1, 109-15. The replication dynamics of the yeast genome are reviewed in Science 294 (2001), 115-21. The genome sequence of Agrobacterium tumefacians, used in plant genetic engineering, is described by two groups in Science 294 (2001), 2266, 2317-22, 2323-9. The complete genome sequence of multiple drug resistant Salmonella enterica serovar Typhi CT18, the agent causing typhoid fever, is in Nature 414 (2001), 848-52. The genomic sequence of Salmonella enterica serovar Typhimurium LT2 is Nature 413 (2001), 852-6. The genome of the eukaryote parasite Encephalitozoon cuniculi is Nature 414 (2001), 450-4. Comparative genomics of the Listeria species that cause disease and do not, is in Science 294 (2001), 849-52. The genome of the puffer fish, Fugu rubripes has almost been full sequenced in a one year long project, Science News 160 (2001), 276. On the genomics of oceanic life, The Scientist (15 Oct. 2001), 15, 20. A discussion of zebrafish genome is Science 294 (2001), 1290-1. Book Review: Mattei, JF., ed., The Human Genome (Council of Europe, 150pp., ISBN 92-871-4567-9). This volume includes 9 chapters discussing clearly some of the main issues in human genetics and the ethical issues that arise from them. The authors are mostly European, and experts in their field. The possibility of an ethical code for genetics is debated, followed by chapters on predictive medicine (Jean Dausset), gene therapy (Robert Manaranche), Industry and the genome (Mike Furness and Kenny Pollock). The question of the common heritage of the genome is discussed (B.M. Knoppers), and there are general chapters on the future of the genome research. It is aimed at a general audience in the field of bioethics, as a short synopsis of arguments in these review level chapters. Most of the arguments have been raised elsewhere in more detail, but it is a useful collection of work for those who seek a brief introduction to the field oif ethics of human genetics. A discussion of HGP is NatGen 30 (2002), 125. The genome of Schizosaccharomyces pombe is published in Nature 415 (2002), 871-80, 845-8. The genome of plant pathogen of Ralstonia solanacearum is in Nature 415 (2002), 497-50. A review of proteomics is in SA (Jan 2002), 27-41.The implications of genomics in society are discussed in Science & Engineering Ethics 8 (2002), 485-96. Craig Venter predicts that individual CDs of human genome sequences will be made for US$500,000 each, NatMed. 8 (2002), 1191. On the use of DNA sequences for research, Science 298 (2002), 948-50. Genome sequences may not always speed up medical research for some applications, e.g. GM insects, NS (12 Oct., 2002), 3. The protein kinases of the human genome are surveyed in Science 298 (2002), 1912-34. Creation of a new genome and a new life is discussed in NS (30 Nov., 2002), 12-3. Pharmacogenomics is discussed in Scientist (30 Sept. 2002), 44-6. A book review about Rosalin Franklin is in SA (Oct. 2002), 96-7.
Papers on the mouse genome sequence include Nature 420 (2002), 456-9, 509-90; NS (7 Dec., 2002), 5, 12-3. Many disease genes are shared with humans, BMJ 325 (2002), 1319; Lancet 360 (2002), 1844. The genome sequence of sea spuirt, Ciona intestinalis has revealed about 17,000 genes spread in a genome about 5% the total size of the human genome, NS (21 Dec., 2002), 16; Science 298 (2002), 1863-4, 2111-2, 2157-70. The genomes of Fugu and zebrafish are on the Internet, NatGen 32 (2002), 93. The genome sequence of a human intestinal tract bacteria, Bifidobacterium longum is reported in PNAS 99 (2002), 14422-5. On the Drosophila genome sequence, Scientist (25 Nov. 2002), 30-1. The future of the US NCHGR is discussed in Science 298 (2002), 1694-6. Comparisons of future species to sequence is made in NS (21 Dec., 2002), 44-7. New Zealand has joined the bovine genome sequencing initiative, APBN 6 (2002), 878. On duplicated genes, Nature 421 (2003), 31-2. Proteomics is discussed in Nature 420 (2002), 591.
Personal genome sequencing is discussed in HCR 33 (Jan. 2003), 9. General articles celebrating the 50 years of history since the publication of the paper on DNA structure are in Lancet 361 (2003), 580-1. On the future of the HGP, Science 298 (2002), 1694-5. On the significance of the human genome, a letter from Venter is in Science 299 (2003), 1183-4. The genome of sea squirt has been sequenced. On the mouse genome, NatGen 33 (2003), 3-4. The ring-like structure of Deinococcus radiodurans genome may be the reason for its radioresistance, Science 299 (2003), 254-9. The involvement of southern genome research centres in sequencing projects is applauded in Science 298 (2002), 2298-9. The question of whether Dr. Craig Venter and colleagues can make a new genome from scratch is discussed,Science 299 (2003), 1006-7. Pharmacogenetics is discussed in NEJM 348 (2003), 529-49, 553-6. On the genetic structure of human populations, Science 298 (2002), 2342-3, 2381-4; SA (Feb. 2003), 22-3. The genetic origins of Andaman Islanders are described in AJHG 72 (2003), 178-84. Neanderthals are discussed in NS (11 Jan., 2003), 46.
The concept of public
knowledge is discussed in Thorsteinsdottir, H. et al. "Genomics - a global
public good?", Lancet 361
(2003), 891-2. A new book in Spanish is Casabona, CMR., Los Genes Y Sus
Leyes. El Derecho Ante el Genoma Humano
(Bilbao-Granada, 2002), 273pp. A consumer charter for genomic services is discussed in NatBio 20 (2002), 767. On the HapMap project and ethnic origins, NatBio 20 (2002), 637, 1181. Personal genotyping and SNPs are discussed in Nature 422 (2003), 917-23. The risks to researchers of
immediately releasing data to Internet are discussed in Nature 421 (2003), 875.
Papers on the 50th
anniversary of the Watson and Crick
paper include Nature 422 (2003),
455, 803-4; NEJM 348 (2003),
1729-30; Science 300 (2003), 213,
277-96. Book reviews of Watson, JD. DNA. The Secret of Life (Knopf, 2003) and McElheny, VK., Watson and DNA (Perseus, 2003) include Science 300 (2003), 432-3; NEJM 348 (2003), 1728-9; NS (26 April 2003), 52; Nature 422 (2003), 809-10; NatMed. 9 (2003), 387. Book reviews of Sulston, J. &
Ferry, G., The Common Thread: A story of Science, Politics, Ethics, and the
Human Genome (Joseph Henry Press,
2002), are in NEJM 348 (2003),
1824-5. A vision of the future of the human genome is in Nature 422 (2003), 835-47; Science 299 (2003), 1515. On the Human Cell project, The
Scientist (24 March 2003), 17.
Papers on the
completion of the human genome
sequence include: Science 299
(2003), 1183-4; Science 300
(2003), 409. The genome of Neurospora crassa ( a bread mould) has been sequenced, Nature 422 (2003), 859-68, 821-2. The genome of Leptospira
interrogans has been sequenced, Nature 422 (2003), 888-93. On anthrax bacteria genome and pathology, Nature 423 (2003), 23-4, 81-91. Genomics of Mycobacterium tuberculosis is discussed in Heredity 90 (2003), 281. On the mouse genome, NatBio 21 (2003), 31-2. Wallaby may
have its genome sequenced, Nature
421 (2003), 778. The idea of pseudogenes and genes are discussed in Nature 423 (2003), 26-7; Science
300 (2003), 258-60. Genes in ancient animals are discussed in NS (26 April 2003), 16-7; Science 300 (2003), 407. On proteomics, Nature
422 (2003), 191-236; NatBio 20
(2002), 10. Errors are common in
mitochondrial DNA databases that have been published, Nature 421 (2003), 773.
Human genetic history
is discussed in Nature 421 (2003),
837-40; 422 (2003), 849-57; 423 (2003), 117-8; Science 299 (2003), 1331-2, 1391-4; 300 (2003), 562; NS (22 Feb. 2003), 15. The gene pools of Helicobacter
pylori relate to genes they obtained from populations in different parts of the
world, Science 299 (2003), 1582-5.
A book review of The Scientific Study of Mummies is Nature
423 (2003), 18. On chromosomal speciation in primates, Science 300 (2003), 267-8. On genome history in yeast and
Arabidopsis, Nature 422 (2003),
383-4, 433-8.
The current estimate of the human gene count is around 25,000, Science 300 (2003), 1484-5; Nature 423 (2003), 576. Defining genes is reviewed in Science 300 (2003), 258-60. A summary of the errors in published mitochondrial DNA sequences in different journals found 58% of 137 papers had sequence errors, Annals of Human Genetics 67 (2003), 2-4. On the quality of SNPs databases, NatGen 33 (2003), 457-9. The human chromosome 7 sequence is in Science 300 (2003), 767-73. On the Y chromosome, Nature 423 (2003), 223, 810-2, 825-37, 873-6. The function of noncoding DNA and junk DNA is discussed in Science 300 (2003), 1246-7.
Ethnic differences and disease phenotypes are discussed in Science 300 (2003), 739-40. Pharmacogenetics is discussed in NEJM 348 (2003), 2041-3. The genomes to life program is discussed in Science 300 (2003), 290-1. A company involved in HapMap project is in a legal battle, Nature 423 (2003), 470. For comments on HapMap project and ethics, EJAIB 13 (2003), 125-7.
A new institute called the Broad Institute (after the benefactor) is being founded to find genetic cures, Science 300 (2003), 1856-7. University of Washington has also received a large donation from Gates Foundation to establish a centre there, Science 300 (2003), 723. The second chromosome sequence of Streptomyces is discussed in NatBio 21 (2003), 505-6, 526-31. On yeast genome comparisons, Nature 423 (2003), 233-4, 241-54.
Papers on human evolution and genetics are in NatGen 33 Supplement (2003), 255-75; 33 (2003), 435-6, 518-21; Nature Reviews 4 (2003), 275-84. A paper on Y chromosome STR haplotypes and genetic structure of US populatioNS of African, European and Hispanic ancestry is in Genome Research 13 (2003), 624-34. The Y chromosome in Polynesia is evidence of a slave trade, AJHG 72 (2003), 1282-7. Human history is discussed in Nature 423 (2003), 468, 742-7, 747-52; NS (31 May 2003), 32-5; Science 300 (2003), 267-8. A gene map for horse is in Genome Research 13 (2003), 742-51. E2F-1 overexpression sensitizes colorectal cancer cells to camptothecin, Cancer Gene Therapy 10 (2003), 168-78. The return of museum bones is discussed in NS (31 May 2003), 5, 12-3.
Counting the right number of human genes is discussed in Science 301 (2003), 1040-1. On evolution of genes, Genetica 118 (2003), 97-294; PNAS 100 (2003), 4369-71. Error rates in mitochondrial DNA sequence are discussed in Annals of Genetics 67 (2003), 2-4. A 3.9 cM resolution SNP linkage map of humans is AJHG 73 (2003), 271-84. On Y chromosome analysis, Lancet 361 (2003), 2136; and the DNA sequence of human chromosome 7, Nature 424 (2003), 157-64.
A 1Mb radiation hybrid map of canine genome, PNAS 100 (2003), 5296-301. On the priorities for genome sequencing, Science 301 (2003), 1176-7. The genome sequences of 4 phytoplankton have now been completed, Nature 424 (2003), 1001-2. Telomeres are discussed in JMG 40 (2003), 385-98. Essential Bacillus subtilis genes are identified in PNAS 100 (2003), 4678-83. The genome of Neurospora crassa has more genes than other yeasts, Current Biology 13 (2003), R552-3. The genome sequence of Prochlorococcus marinus SS120 has been determined, PNAS 100 (2003), 10020-5. On comparative genomics, Nature 424 (2003), 788-93. Direct haplotyping of long range genomic DNA with M1-PCR is described in PNAS 100 (2003), 7449-53. Haplotype tagging is described in PNAS 100 (2003), 9900-5. The origin of humans is discussed in SA (July 2003), 13-4; PNAS 100 (2003), 9079-84. Enlarging the genus Homo to include Chimpanzee is discussed in light of the 99.4% nonsynonymous DNA identity between humans and chimpanzees, PNAS 100 (2003), 7181-8; 7684-9; Current Biology 13 (2003), R464-5; Lancet 361 (2003), 2004 A discussion of racial diversity is California Law Review (2003), 1149-66. On genetic heterogeneity of Icelanders, Annals of Human Genetics 67 (2003), 5-16, 281-97. The question of whether human genomic databases are a global public good are discussed in European J. Health Law 9 (2002), 27-41. Genomics and global health is discussed in Science 302 (2003), 597-601. On social and ethical issues of the human genome, Turkish J. Medical Ethics, Law & History 11 (2003), 162-69. Allegations of exploitation of Chinese subjects for their DNA continues, in GeneWatch 16 (Sept. 2003), 10-11. In general on the future of genomic medicine, NEJM 349 (2003), 969-74, 996-8; Nature 425 (2003), 123-4, 758-62; Heredity 91 (2003), 353; Science 302 (2003), 533, 588-609. On the HapMap project, Nature 425 (2003), 758-9. The complete DNA sequence of human chromosome 6 is finished, Nature 425 (2003), 775-6, 805-11. The hidden layers of genomic information in non-coding areas are described in SA (Nov. 2003), 26-33. A gene expression atlas of the central nervous system based on ABCs is in Nature 425 (2003), 917-25. The dog genome is announced in Science 301 (2003), 1613+, 1809, 1843, 1854-5, 1898-1903; Nature 425 (2003), 442. Also on dog genetics, Science 298 (2002), 1540-2. The genome sequence of Chromobacterium violaceum is reported in PNAS 100 (2003), 11660-5. The collection of mouse cDNA clones is described in Science 302 (2003), 217-8; Nature 425 (2003), 226. Functional analysis of mouse chromosome 11 is in Nature 425 (2003), 81-6. Digital gene and protein databases are discussed in The Scientist (22 Sept. 2003), 30-1. On human Y chromosome, NatGen 34 (2003), 246-7. A gene-coexpression network for global discovery of conserved genetic modules is announced in Science 302 (2003), 249-55. On EST tags, Trends in Plant Science 8 (2003), 321-9. On clinical proteomics, Nature 425 (2003), 905. China is concentrating on the liver proteome, Nature 425 (2003), 441. Human history is being traced with fossil and DNA evidence, Science 300 (2003), 1641; 302 (2003), 555; SA (Nov. 2003), 54-63; PNAS 100 (2003), 11188-9; NS (16 Aug. 2003), 17; Nature 425 (2003), 453. It appears that until 10,000 years ago there were few human males breeding with many females, NS (6 Sept. 2003), 18. Of the small number of genes (N=91) different between chimps and humans, 90% (N=83) are active in the brain, NS (16 Aug. 2003), 14; PNAS 100 (2003). A paper explaining HapMap is International HapMap Consoritum, "The International HapMap project", Nature 426 (2003), 789-96. Discussion of HapMap is also in Nature 426 (2003), 739. A paper on the way genomics is being applied is Bittles, AH. "Genomics and the changing profile of human disease", Biology International 45 (2003), 3-8. A letter by LL Cavalli-Sforza on the HGDP is in Nature 428 (2004), 467. Discussion of the concept of race is in SA (Dec. 2003), 50-7; Nature 427 (2004), 123-4, 275-8, 487-8; EJAIB 14 (March 2004).The charitable trust as a model for genomic databanks is discussed in NEJM 350 (2004), 85-6. On genomic medicine, NEJM 349 (2003), 2170-1; Nature Reviews Genetics 5 (2004), 311-7. On comparisoNS to chimpanzees, Nature 427 (2004), 208-9; Genomics and Proteomics 3 (Nov. 2003), 18-23. On the rat genome sequence, Nature 428 (2004), 493-521; Science 303 (2004), 455-8; and the dog genome, Heredity 92 (2004), 273-4. Genomics of cacao is discussed in Trends in Plant Sciences 8 (2003), 561-3. On the environmental genome shotgun sequencing of the Sargasso sea, Science 304 (2004), 58-60, 66-74. On human chromosome 13 sequence, Nature 428 (2004), 522-35.
A study of the way language and distance isolate persoNS genetically in Belgium is Annals Hum. Gen. 68 (2003), 1-16. The number of SNPs loci for detecting population structure is between 65-100 independent loci, Human Heredity 55 (2003), 37-45.
A summary of the HapMap strategy is in Science 304 (2004), 671-2; see also on ELSI issues, International HapMap Consortium, "The International HapMap project", Nature Reviews - Genetics 5 (2004), 467-475. Ethics
guidelines for population genetic research from Quebec are discussed in Nature
Reviews Genetics 5 (2004), 408. Global public goods and genomics and
equity is discussed in Bulletin WHO 82 (2004),
385-9. The HapMap strategy is discussed in Science 304
(2004), 671-2. The guidelines for naming populations in the HapMap
project are available on the hapmap website, www.hapmap.org. The use of genomes
to make medicines is discussed in Nature
429 (2004), 440-81; and pharmacogenomics in Nature 429 (2004), 464-8. The quality assessment of the human genome is
discussed in Nature 429 (2004), 365-8.
Ultraconserved elements in the human genome are reviewed in Science 304 (2004), 1321-5. Genomic complexity is discussed
in Science 302 (2003), 1401-4; Nature 429 (2004), 133; Nature Reviews Genetics 5 (2004), 456-65. On Alu elements, Nature
Reviews Genetics 5 (2004), 406-7. A protein
interaction map of Drosophila melanogaster is in Science 302 (2003), 1727-36. Neurogenomics is discussed in Nature
Neuroscience 7 (2004), 429-33. Japan has
launched the Genome Network, to study the function of all genes, Nature 429 (2004), 332. Germany also has established
networks to focus on diseases, Nature 429 (2004), 232. On bioinformatics software, Nature 429 (2004), 241. TIGR will
stay as it is, rather be reorganized, Science 304 (2004), 1426. The USDA is helping
to sequence the cow genome, which
includes USA, Canada, New Zealand and Australia, Science 302 (2003), 2048-9. On the rat genome, NatGen. 36 (2004), 441-2. The dog genome is discussed in Science 304 (2004), 1093-5. Sequencing centers may be able
to sequence more genomes at lower coverage, Science 304
(2004), 1227, 1445-6. The genome sequence of the lignocellulose degrading fungus
Phanerochaete chrysosporium strain RP78 has been finished, NatBio 22 (2004), 695-700, 679-8. A parasite has also been
sequenced, Cryptosporidium parvum, Science 304 (2004), 441-5. Syngenta donated 48,000 mutant
Arabidopsis plants to a stock center with no fees, Science 304
(2004), 1426. The genetic evolution of men is discussed in NS (8 May 2004), 11. Population
genetics and benefit sharing is discussed in Health law Journal 11 (2003), 89-118. It is still difficult to gain
access to research the Kennewick Man, Science 305 (2004), 591. There are still disputes between
medical geneticists and Native
American communities, Nature 430
(2004), 391, 489, 500-2. Despite the discovery of the Huntington disease gene
through research in Venezuela, the residents still have many problems, Lancet 364 (2004), 569-70. Deconstructing the relationship
between genetics and race is
discussed in Nature Reviews – Genetics 5 (2004), 598-609. Human colonization history can be
traced by genetics, Heredity 93
(2004), 124-5; or in rat genetics, Science 304 (2004), 1742. The use of the term Caucasian is discussed in NatGen 36 (2004), 541. A personal review of Yusuke Nakamura
is in NatMed. 10 (2004), 560. In
general on the genome, NS (19 June
2004), 46. Studies of
roundworm C.elegans have shown that mutations occur frequently, Nature 431 (2004), 625-6.
Duplicating SNPs are discussed in NatGen 36 (2004), 789-90; Nature Reviews –
Genetics 5
(2004), 641. A book review of Human Genome Epidemiology is JAMA 292 (2004), 385-6. Pharmacogenetic tests are discussed in Pharmacogenetics 14 (2004), 333-4; JAMA 291 (2004), 2821-7; BMJ 328 (2004), 1482-6; AJHG 75 (2004), 353-62. The ethics of having research
populations reflect the diversity of the population is addressed in JME 30 (2004), 185-9. Genome wide
variation in expression is discussed in Nature 430 (2004), 743-7. On cost
effectiveness in pharmacogenomics, Pharmacoeconomics 22 (2004), 481-93. Injury
research in the genomic era is discussed in Lancet 363 (2004), 2076-83. A book review of the Malaria
Parasite is NatGen 36 (2004), 545. A review of
the Mutagenic insertion and chromosome engineering resource (MICER) is NatGen 36 (2004), 867-71. Widespread
genes suggest genes develop in many places, Science 304 (2004), 1591. Ancient DNA
tests are discussed in AJHG 75 (2004), 240-50; Current Biology 14 (2004), R463. On the
evolution of the genome, Nature Reviews – Genetics 5 (2004), 482; and in yeasts,
Nature 430
(2004), 35-44. Comparisons between dog breeds and DNA is described in Nature
Reviews – Genetics 5 (2004), 484. Chemical genomics and IPRs are discussed in Science 304 (2004), 1728. The genome
of Propionibacterium acnes in human skin is Science 305 (2004), 671-3.
There may be greater differences between chimpanzees and humaNS than thought based on analysis of human chromosome 21, The International Chimpanzee Chromosome 22 Consortium, "DNA sequence and comparative analysis of chimpanzee chromosome 22", Nature 429 (2004), 382-8. The sequence of human chromosome 9 and 10 has been published, Nature 429 (2004), 369-381. Further work for human genome sequencing is discussed in Nature Reviews - Genetics 5 (2004), 345-54. On a large array (that is open) of human 21,243 full length cDNAs, NatGen 36 (2004), 40-5. A review of the Nature Encyclopedia of the Human Genome is BMJ 328 (2004), 172. Darryl Macer has two papers in it, among many on bioethics topics, available from Eubios web site; or subscribe to the nature website!
On genomics for infectious diseases, Lancet 363 (2004), 1337; Nature 428 (2004), 942-5. See the genome sequence of Treponema denticola, PNAS 101 (2004), 5646-51. The genome sequence of Saccharopolyspora erythraea has been released, Euro Biotech News 4 (No.4, 2004), 12; as has Desulfovibrio vulgaris, NatBio 22 (2004), 550+: Ashbya gossypii, Science 304 (2004), 304-7; and Cyanidioschyzon merolae 10D, Nature 428 (2004), 653+; and Thermus thermophilus, NatBio 22 (2004), 524-5, 547-53. On the rat genome sequence, NatBio 22 (2004), 529-30; Nature Reviews - Genetics 5 (2004), 327; and on the pig genome, Genetical Research 83 (2004), 1-6. On worm genome comparisons, Nature 426 (2003), 395-6. More than 180 full genomes have now been sequenced, Science 303 (2004), 739;
China is developing liver proteomics, NatBio 22 (2004), 136-7. Ancient genome duplication occurred in yeast, Nature 428 (2004), 617-24. Resurrecting ancient genes is discussed in Nature Reviews - Genetics 5 (2004), 366-78. Coral genomics has shown how old human genes are, Nature 426 (2003), 744. The unseen genome is reviewed in SA (Dec. 2003), 78-85. Mis-named "Junk" genome is also read although the function remaiNS unclear, NS (21 Feb. 2004), 10. William Haseltine has left the company he founded Human Genome Sciences, Science 304 (2004), 33; NatBio 22 (2004), 497; Nature 428 (2004), 456.
Comparative human sequencing is discussed in Heredity 92 (2004), 365-79; Current Biology 13 (2004), R901-3; NS (7 Feb. 2004), 40-3; (6 March 2004), 42-5 Nature 428 (2004), 373-4, 415-8; Lancet 362 (2003), 1635; 363 (2004), 952-3. A review of human migration to New Zealand is in NS (24 April 2004), 38-41. Use of Helicobacter pylori sequence to distinguish human populatioNS is described in PNAS 101 (2004), 4746-51. Return of ancient bones is discussed in NS (15 Nov. 2003), 9; (14 Feb. 2004), 18-9. Neanderthals may have been killed off by the big chill, NS (24 Jan. 2004), 10-1.
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